Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.3e-219 765.4 411 100.0
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.3e-202 708.0 416 91.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.5e-180 635.2 422 82.7
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 3.6e-177 625.2 417 81.3
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 8.7e-155 550.8 388 74.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.6e-153 546.6 434 72.6
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.7e-153 545.4 394 71.1
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.4e-152 543.5 390 71.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.5e-151 540.0 398 71.6
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 7.7e-151 537.7 391 70.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.7e-150 536.6 426 69.0
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.1e-148 529.6 399 71.2
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.9e-148 527.7 430 67.4
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.4e-147 526.9 398 69.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 7.4e-146 521.2 397 70.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.7e-145 518.8 385 70.1
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.8e-144 516.5 388 71.4
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.4e-144 516.2 421 66.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.1e-144 515.4 387 68.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 9.1e-144 514.2 401 67.8
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 5.9e-143 511.5 433 68.1
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 7.7e-143 511.1 429 67.4
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.7e-143 511.1 429 67.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.0e-142 510.8 430 67.2
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.0e-142 510.8 434 69.4
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.0e-142 510.8 434 69.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.2e-142 509.6 431 69.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.9e-142 509.2 434 69.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.8e-142 508.8 429 67.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.8e-142 508.8 401 67.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 6.5e-142 508.1 402 66.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-141 506.1 429 66.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.5e-141 506.1 435 66.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-140 503.4 429 66.9
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.7e-140 502.7 386 70.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.7e-140 502.7 397 68.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.7e-140 501.9 394 64.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 7.9e-140 501.1 389 68.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.0e-139 499.2 391 65.7
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.9e-139 498.8 387 70.8
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 5.1e-139 498.4 396 67.4
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 6.7e-139 498.0 392 67.3
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.1e-138 497.3 388 66.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.5e-138 496.9 394 65.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.5e-138 496.9 396 64.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.0e-138 496.5 392 65.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.6e-138 496.1 395 64.3
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 4.4e-138 495.4 386 69.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 9.7e-138 494.2 383 66.3
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-137 493.8 397 66.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.3e-137 493.8 398 64.3
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.8e-137 492.7 380 65.3
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-137 492.7 413 68.0
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.7e-137 492.3 379 68.1
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.7e-137 492.3 391 63.9
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-136 490.7 378 68.0
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.4e-136 490.3 386 67.1
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.4e-136 490.3 378 68.0
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.4e-136 490.3 378 68.0
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.4e-136 489.6 414 66.7
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.1e-136 488.8 395 66.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.2e-135 487.3 385 66.5
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.5e-135 486.9 384 65.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.5e-135 486.9 386 65.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.1e-133 480.7 384 66.4
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.5e-133 480.3 377 65.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.5e-133 479.6 417 65.7
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.2e-133 478.8 382 67.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 9.4e-133 477.6 393 63.9
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.6e-132 476.9 378 65.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 3.0e-131 472.6 391 63.9
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 6.7e-131 471.5 389 63.8
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.1e-130 470.7 392 63.3
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.5e-130 470.3 391 62.7
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.3e-130 469.2 397 62.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.4e-130 468.8 373 66.0
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 3.7e-129 465.7 391 64.7
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.4e-128 463.0 394 63.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 3.1e-128 462.6 384 62.5
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.1e-128 462.6 381 63.0
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 7.0e-128 461.5 398 62.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.6e-127 460.3 407 59.5
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.5e-127 459.1 391 61.6
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.7e-127 458.0 376 64.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.3e-126 457.2 408 60.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.2e-126 456.4 388 63.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.2e-126 456.4 399 58.9
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.0e-126 455.3 389 63.0
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.1e-125 454.1 389 63.0
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.9e-125 453.4 412 62.4
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.6e-124 450.3 396 60.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.6e-124 449.1 420 64.0
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-123 447.2 383 64.5
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-123 447.2 381 63.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.8e-123 446.8 381 63.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.8e-123 446.8 357 66.4
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 4.0e-123 445.7 382 64.4
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 5.2e-123 445.3 405 59.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 6.8e-123 444.9 400 60.8
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.2e-122 444.1 382 62.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 5.7e-122 441.8 403 59.8
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.5e-122 441.4 418 62.2
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.7e-121 439.1 415 61.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 4.8e-121 438.7 405 58.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.4e-120 435.3 385 60.0
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 9.1e-120 434.5 399 59.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.7e-119 433.0 386 58.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.2e-118 429.9 364 59.9
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-117 427.6 374 58.8
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-117 427.6 375 59.2
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.9e-117 426.8 375 58.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 6.1e-116 421.8 384 59.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.0e-111 406.8 391 58.3
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.6e-108 396.0 300 69.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 3.2e-104 382.9 367 55.3
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 7.0e-104 381.7 319 62.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.9e-103 378.6 378 54.8
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.3e-102 376.7 377 55.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.2e-100 370.9 372 55.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 8.9e-99 364.8 412 51.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.1e-96 355.9 394 50.3
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.2e-83 312.4 323 53.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.8e-75 287.3 242 62.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.3e-73 281.2 428 42.3
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.1e-67 261.5 214 60.7
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.1e-62 242.7 304 45.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 5.3e-59 232.6 398 37.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 8.4e-57 225.3 226 55.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.2e-56 223.0 221 51.1
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.6e-53 211.8 204 56.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.8e-50 202.6 150 68.0
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.9e-48 197.6 192 66.1
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.6e-45 185.3 190 63.7
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 9.6e-45 185.3 146 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 8.4e-41 172.2 305 35.1
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.1e-39 167.5 356 33.1
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 4.6e-39 166.4 159 56.6
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.8e-14 84.7 78 53.8
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.3e-12 78.6 113 44.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-11 75.5 65 56.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.9e-09 67.4 165 30.3
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-08 64.7 36 72.2


User provided reference genes

Program Settings