Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0164100 Salix brachista HOM05D008191 ORTHO05D010044 8.8e-102 373.6 189 100.0
Potri.002G191500 Populus trichocarpa HOM05D008191 ORTHO05D010044 1.0e-81 307.0 187 82.4
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 1.5e-40 170.2 179 46.4
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 9.6e-40 167.5 185 50.3
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 5.3e-38 161.8 152 53.9
RcHm_v2.0_Chr3g0486661 Rosa chinensis HOM05D008191 ORTHO05D010044 7.1e-35 151.4 187 46.5
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 3.9e-33 145.6 178 47.2
Gohir.A07G130033 Gossypium hirsutum HOM05D008191 ORTHO05D010044 7.3e-32 141.4 153 45.8
COL.COLO4_23185 Corchorus olitorius HOM05D008191 ORTHO05D010044 2.1e-31 139.8 188 40.4
Gohir.D07G134300 Gossypium hirsutum HOM05D008191 ORTHO05D010044 4.8e-31 138.7 153 45.1
Gorai.001G145900 Gossypium raimondii HOM05D008191 ORTHO05D010044 4.8e-31 138.7 153 45.1
Atru.chr5.927 Acer truncatum HOM05D008191 ORTHO05D010044 1.4e-30 137.1 181 42.0
Cpa.g.c31737 Carica papaya HOM05D008191 ORTHO05D010044 2.4e-30 136.3 153 45.1
QL01p035229 Quercus lobata HOM05D012615 ORTHO05D010044 5.3e-30 135.2 186 41.4
THA.LOC104826194 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 1.3e-28 130.6 148 44.6
THA.LOC104827389 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 6.4e-28 128.3 148 43.9
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 9.3e-27 124.4 181 42.0
Atru.chr5.928 Acer truncatum HOM05D008191 ORTHO05D010044 2.1e-26 123.2 154 40.9
Gohir.A11G107700 Gossypium hirsutum HOM05D008191 ORTHO05D010044 1.0e-25 120.9 153 39.9
QL09p000952 Quercus lobata HOM05D012615 ORTHO05D010044 1.1e-24 117.5 192 35.4
Carub.0004s1276 Capsella rubella HOM05D008191 ORTHO05D010044 3.7e-23 112.5 181 35.4
QL02p008132 Quercus lobata HOM05D012615 ORTHO05D010044 4.8e-23 112.1 184 37.0
AL4G26690 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 1.2e-21 107.5 148 39.9
PSO724G1245 Papaver somniferum HOM05D008191 ORTHO05D010044 2.6e-21 106.3 151 35.8
PSO620G0001 Papaver somniferum HOM05D008191 ORTHO05D010044 3.4e-21 105.9 153 37.9
AT2G31430 Arabidopsis thaliana HOM05D008191 ORTHO05D010044 5.8e-21 105.1 148 39.2
Ciclev10024443m.g Citrus clementina HOM05D008191 ORTHO05D010044 6.4e-20 101.7 150 32.7
PSO724G0909 Papaver somniferum HOM05D008191 ORTHO05D010044 1.9e-19 100.1 150 34.0
PSO729G0168 Papaver somniferum HOM05D008191 ORTHO05D010044 2.5e-19 99.8 176 34.1
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 1.0e-17 94.4 174 30.5
CARHR125080 Cardamine hirsuta HOM05D008191 ORTHO05D010044 1.8e-17 93.6 147 35.4
Gorai.007G120800 Gossypium raimondii HOM05D008191 ORTHO05D010044 1.9e-16 90.1 153 36.6
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 7.4e-16 88.2 151 31.1
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 6.2e-15 85.1 169 31.4
THA.LOC104801314 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 9.0e-14 81.3 172 29.1
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 4.5e-13 79.0 151 29.1
QL02p008192 Quercus lobata HOM05D012615 ORTHO05D010044 5.8e-13 78.6 189 29.1
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 7.6e-13 78.2 158 29.7
C09p39710 Brassica napus HOM05D008191 ORTHO05D010044 1.0e-12 77.8 146 32.9
BolC9t56860H Brassica oleracea HOM05D008191 ORTHO05D010044 1.0e-12 77.8 146 32.9
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 1.3e-12 77.4 134 35.8
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.7e-12 77.0 151 28.5
AL4G26680 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 2.2e-12 76.6 152 32.2
Thecc.04G309600 Theobroma cacao HOM05D008191 ORTHO05D010044 2.9e-12 76.3 176 25.6
Carub.0006s2939 Capsella rubella HOM05D008191 ORTHO05D010044 4.9e-12 75.5 176 30.1
Sp6g13250 Schrenkiella parvula HOM05D008191 ORTHO05D010044 1.1e-11 74.3 117 33.3
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 1.4e-11 73.9 166 27.1
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.4e-11 73.9 178 29.8
QL02p008363 Quercus lobata HOM05D012615 ORTHO05D010044 1.9e-11 73.6 186 29.0
Aa31LG5G5450 Aethionema arabicum HOM05D008191 ORTHO05D010044 2.5e-11 73.2 148 28.4
AL6G44660 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 5.5e-11 72.0 149 31.5
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 9.3e-11 71.2 147 27.9
Aa31LG5G5540 Aethionema arabicum HOM05D008191 ORTHO05D010044 1.2e-10 70.9 150 28.7
Carub.0007s2161 Capsella rubella HOM05D008191 ORTHO05D010044 1.2e-10 70.9 146 31.5
AT2G31425 Arabidopsis thaliana HOM05D008191 ORTHO05D010044 1.6e-10 70.5 152 29.6
QL02p008120 Quercus lobata HOM05D012615 ORTHO05D010044 1.6e-10 70.5 186 28.0
Carub.0005s2245 Capsella rubella HOM05D008191 ORTHO05D010044 4.6e-10 68.9 146 31.5
Migut.O00479 Erythranthe guttata HOM05D022792 ORTHO05D001819 4.6e-10 68.9 149 30.2
MBI18_g25092_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D005233 4.6e-10 68.9 146 24.0
CAN.G363.37 Capsicum annuum HOM05D009438 ORTHO05D010870 6.1e-10 68.6 138 27.5
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 6.1e-10 68.6 168 28.0
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 6.1e-10 68.6 173 27.2
Sp4g10300 Schrenkiella parvula HOM05D008191 ORTHO05D010044 6.1e-10 68.6 150 32.0
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 6.1e-10 68.6 142 26.8
Aa31LG5G5460 Aethionema arabicum HOM05D008191 ORTHO05D010044 7.9e-10 68.2 179 27.4
Migut.I00312 Erythranthe guttata HOM05D022792 ORTHO05D001819 7.9e-10 68.2 149 29.5
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 7.9e-10 68.2 113 31.9
Migut.G01351 Erythranthe guttata HOM05D022792 ORTHO05D001819 1.0e-09 67.8 149 30.2
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.0e-09 67.8 142 26.8
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 1.3e-09 67.4 141 31.2
MBI19_g26316_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.3e-09 67.4 147 26.5
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.8e-09 67.0 151 31.8
CARHR125060 Cardamine hirsuta HOM05D008191 ORTHO05D010044 3.0e-09 66.2 180 28.9
COL.COLO4_12893 Corchorus olitorius HOM05D022291 ORTHO05D005233 3.0e-09 66.2 174 25.3
PSO414G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 3.0e-09 66.2 116 36.2
PSO714G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 3.0e-09 66.2 116 36.2
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 3.9e-09 65.9 176 27.8
BcaB04g20860 Brassica carinata HOM05D009524 ORTHO05D001207 5.1e-09 65.5 145 31.0
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 8.7e-09 64.7 154 25.3
Eucgr.D01181 Eucalyptus grandis HOM05D001445 ORTHO05D001261 8.7e-09 64.7 166 26.5
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 8.7e-09 64.7 166 27.1
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 8.7e-09 64.7 147 29.3
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 8.7e-09 64.7 177 26.6
Eucgr.D01180 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.1e-08 64.3 166 27.1
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.1e-08 64.3 172 27.3
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.5e-08 63.9 94 35.1
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.5e-08 63.9 94 35.1
Ciclev10002621m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.9e-08 63.5 185 25.9
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.9e-08 63.5 146 29.5
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.9e-08 63.5 142 23.9
A01p37140 Brassica napus HOM05D009524 ORTHO05D001207 2.5e-08 63.2 149 30.2
BraA01t03775Z Brassica rapa HOM05D009524 ORTHO05D001207 2.5e-08 63.2 149 30.2
AL5G36930 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 3.3e-08 62.8 146 27.4
MBI18_g25089_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D001819 4.3e-08 62.4 145 24.8
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.3e-08 62.4 183 27.9
TPR.G39508 Trifolium pratense HOM05D001445 ORTHO05D001261 4.3e-08 62.4 154 31.2
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 5.7e-08 62.0 142 24.6
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 5.7e-08 62.0 173 26.0
Lsat_1_v5_gn_6_117520 Lactuca sativa HOM05D058011 ORTHO05D001819 5.7e-08 62.0 147 28.6
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 7.4e-08 61.6 154 31.2
SGA_v2.0_scaffold186G40153 Striga asiatica HOM05D008403 ORTHO05D010317 7.4e-08 61.6 157 29.3
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 7.4e-08 61.6 132 31.1
AT3G17152 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 1.3e-07 60.8 145 28.3
Haze_05101 Corylus avellana HOM05D012615 ORTHO05D010044 1.3e-07 60.8 76 47.4
PSO144G0022 Papaver somniferum HOM05D023066 ORTHO05D037272 1.3e-07 60.8 179 25.7
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.3e-07 60.8 144 27.1
MBI19_g26312_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.6e-07 60.5 150 26.7
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.6e-07 60.5 129 25.6
Rhsim03G0038700 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.6e-07 60.5 159 28.9
Oeu000482.1 Olea europaea HOM05D009438 ORTHO05D010870 2.2e-07 60.1 130 25.4
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 2.2e-07 60.1 140 25.7
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 2.2e-07 60.1 84 34.5
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.2e-07 60.1 140 27.9
Eucgr.D01179 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.8e-07 59.7 166 25.9
Rhsim03G0038200 Rhododendron simsii HOM05D001578 ORTHO05D001207 2.8e-07 59.7 155 29.0
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.8e-07 59.7 137 28.5
Aa31LG6G11940 Aethionema arabicum HOM05D008191 ORTHO05D010044 3.7e-07 59.3 149 26.8
A03p07210 Brassica napus HOM05D009524 ORTHO05D001207 3.7e-07 59.3 146 29.5
BraA03t10043Z Brassica rapa HOM05D009524 ORTHO05D001207 3.7e-07 59.3 146 29.5
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 3.7e-07 59.3 138 30.4
Nitab4.5_0000035g0080 Nicotiana tabacum HOM05D003146 ORTHO05D001819 3.7e-07 59.3 129 29.5
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 4.8e-07 58.9 171 25.1
PSO761G0197 Papaver somniferum HOM05D023066 ORTHO05D037272 4.8e-07 58.9 128 28.9
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 4.8e-07 58.9 181 26.0
Ciclev10004017m.g Citrus clementina HOM05D001578 ORTHO05D001207 6.3e-07 58.5 167 23.4
COL.COLO4_04545 Corchorus olitorius HOM05D015467 ORTHO05D001819 6.3e-07 58.5 160 28.8
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 6.3e-07 58.5 148 27.0
QL04p005674 Quercus lobata HOM05D003146 ORTHO05D001819 6.3e-07 58.5 157 27.4
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 6.3e-07 58.5 153 28.8
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 6.3e-07 58.5 153 28.8
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 6.3e-07 58.5 153 25.5
Haze_04447 Corylus avellana HOM05D001578 ORTHO05D001207 8.2e-07 58.2 170 27.1
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 8.2e-07 58.2 179 25.1
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.1e-06 57.8 131 26.7
AL3G30140 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 1.4e-06 57.4 144 27.8
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 1.4e-06 57.4 161 24.2
Rhsim03G0038400 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.4e-06 57.4 161 29.2
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 1.8e-06 57.0 176 25.6
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.8e-06 57.0 172 25.6
QL02p008383 Quercus lobata HOM05D012615 ORTHO05D010044 1.8e-06 57.0 92 32.6
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 1.8e-06 57.0 177 23.2
QL07p004956 Quercus lobata HOM05D011459 ORTHO05D013640 1.8e-06 57.0 142 23.9
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.8e-06 57.0 131 26.7
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 1.8e-06 57.0 146 27.4
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 2.4e-06 56.6 93 32.3
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.4e-06 56.6 174 25.3
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 2.4e-06 56.6 170 24.7
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.1e-06 56.2 159 27.0
C03p08210 Brassica napus HOM05D009524 ORTHO05D001207 4.1e-06 55.8 146 28.8
BolC3t13318H Brassica oleracea HOM05D009524 ORTHO05D001207 4.1e-06 55.8 146 28.8
HanXRQChr04g0115481 Helianthus annuus HOM05D001445 ORTHO05D001261 4.1e-06 55.8 153 28.8
MBI19_g05147_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 4.1e-06 55.8 153 24.8
Peaxi162Scf00084g00062 Petunia axillaris HOM05D001445 ORTHO05D001261 4.1e-06 55.8 155 22.6
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 5.3e-06 55.5 180 23.9
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 6.9e-06 55.1 144 25.0
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 6.9e-06 55.1 175 25.1
Ah.01g010410 Amaranthus hybridus HOM05D001445 ORTHO05D001261 9.0e-06 54.7 137 29.2
CANSAT56G1928 Cannabis sativa HOM05D008403 ORTHO05D010317 9.0e-06 54.7 152 21.7
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 9.0e-06 54.7 153 24.8
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 9.0e-06 54.7 86 32.6
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 9.0e-06 54.7 86 32.6
QL07p004996 Quercus lobata HOM05D011459 ORTHO05D013640 9.0e-06 54.7 143 23.8
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 9.0e-06 54.7 143 24.5
THA.LOC104802609 Tarenaya hassleriana HOM05D009524 ORTHO05D001207 9.0e-06 54.7 154 27.3


User provided reference genes

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