Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 5.6e-203 710.7 347 100.0
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.8e-186 655.2 347 92.2
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.3e-148 530.0 347 74.4
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 7.7e-144 514.2 348 71.3
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 5.1e-140 501.5 348 68.1
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 8.8e-140 500.7 348 69.0
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 2.5e-139 499.2 348 68.4
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 4.8e-138 495.0 348 68.4
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 8.2e-138 494.2 348 66.7
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 1.4e-137 493.4 348 66.4
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.4e-137 492.7 349 68.5
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 3.1e-137 492.3 348 67.2
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.2e-136 490.3 347 68.0
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.0e-136 489.6 347 67.1
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.5e-136 488.4 347 67.4
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.3e-135 486.9 353 66.3
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.8e-135 485.3 347 66.9
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.2e-133 480.3 348 66.7
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.4e-132 476.9 348 65.5
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.8e-132 476.5 348 64.4
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.1e-131 473.8 348 64.4
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.1e-131 473.8 348 64.4
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.5e-131 473.4 348 64.7
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.6e-131 472.6 348 64.4
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.3e-130 470.3 336 64.0
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.4e-129 466.8 349 63.0
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 5.3e-129 464.9 348 63.2
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 9.1e-129 464.2 352 62.8
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-128 463.4 349 63.9
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.5e-128 463.4 352 64.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 2.0e-128 463.0 349 63.0
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.0e-127 460.7 346 65.3
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.2e-127 459.5 347 64.0
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 5.0e-127 458.4 348 62.9
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 4.2e-126 455.3 348 63.8
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.6e-125 453.4 315 68.3
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 4.7e-125 451.8 352 61.9
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.8e-124 449.9 334 63.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 3.0e-124 449.1 335 64.8
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 8.8e-124 447.6 339 64.3
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.1e-123 447.2 365 59.2
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.1e-123 447.2 338 63.0
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.0e-123 446.4 349 60.7
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.3e-123 445.7 337 63.5
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 7.4e-123 444.5 365 59.5
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 9.7e-123 444.1 349 61.0
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.7e-122 443.4 349 61.3
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.7e-122 443.4 363 60.3
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.8e-121 439.9 348 60.3
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.4e-121 439.5 349 60.2
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 3.1e-121 439.1 307 66.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 5.3e-121 438.3 349 60.7
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 5.3e-121 438.3 301 68.8
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 9.1e-121 437.6 294 68.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.6e-120 436.8 334 61.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.6e-120 436.8 322 63.4
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.6e-120 436.8 358 59.5
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.0e-120 436.4 342 60.8
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.0e-119 434.1 348 60.1
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 2.9e-119 432.6 305 64.9
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.8e-119 432.2 337 60.8
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 6.5e-119 431.4 350 61.1
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 3.2e-118 429.1 356 59.6
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 3.2e-118 429.1 349 60.2
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.2e-118 428.7 340 61.2
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.1e-117 426.4 280 69.6
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 4.7e-117 425.2 336 60.7
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 6.1e-117 424.9 339 61.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.0e-116 424.1 349 57.6
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.8e-116 423.3 350 60.0
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 4.0e-116 422.2 349 57.0
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 5.7e-115 418.3 333 58.9
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 5.7e-115 418.3 354 58.5
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 7.5e-115 417.9 350 58.6
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.8e-114 415.2 350 58.6
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 6.3e-114 414.8 348 58.6
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 8.3e-114 414.5 311 62.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 5.3e-113 411.8 349 59.0
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.2e-112 410.6 329 58.7
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 2.0e-112 409.8 337 60.8
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 4.5e-112 408.7 333 56.5
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.8e-111 405.6 332 56.0
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 6.5e-111 404.8 338 57.7
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 9.4e-110 401.0 348 58.3
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 9.4e-110 401.0 348 58.3
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.6e-109 400.2 335 56.1
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.6e-109 399.1 349 57.6
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 4.7e-109 398.7 347 55.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.7e-109 398.7 347 55.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 8.0e-109 397.9 347 55.9
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.3e-103 380.6 314 56.4
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.3e-103 380.6 340 55.0
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.1e-102 377.5 349 53.6
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.5e-102 376.3 286 60.8
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.2e-101 374.0 334 52.4
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.2e-99 367.5 350 52.0
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.5e-99 367.1 335 54.3
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.4e-97 360.5 354 51.1
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.5e-96 355.5 355 51.3
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 7.8e-96 354.8 339 54.3
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 3.9e-95 352.4 340 50.3
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 5.0e-95 352.1 294 57.5
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.3e-87 327.4 251 60.2
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.6e-80 303.9 271 54.6
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.3e-76 290.0 220 62.3
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 5.8e-75 285.4 342 42.7
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 4.1e-73 279.3 334 41.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.2e-72 277.7 287 44.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.1e-72 276.9 297 47.5
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.2e-69 267.7 325 42.2
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 9.9e-67 258.1 294 42.9
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 7.1e-65 251.9 315 44.4
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.0e-63 248.1 338 40.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-56 223.8 190 51.6
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-55 221.5 154 65.6
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-51 207.6 330 37.0
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-51 205.3 319 35.7
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.3e-47 194.5 282 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-47 193.4 288 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-47 192.6 292 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.0 308 36.0
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.0 308 36.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-45 187.6 250 41.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.8e-45 186.0 308 36.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-44 182.6 297 36.0
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.2e-43 181.4 293 35.2
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-41 174.5 296 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-40 171.4 289 31.8
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-40 171.4 300 35.3
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-40 171.4 238 39.1
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.2e-40 171.4 284 33.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-40 169.5 314 34.1
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-35 154.5 293 32.8
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-35 153.3 296 32.4
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-34 150.2 293 32.4
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.3e-31 141.4 315 29.2
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-26 124.4 273 30.0
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 4.3e-22 109.8 280 27.9
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.6e-14 84.0 74 45.9
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-12 76.3 63 50.8
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.6e-11 73.9 154 29.2
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 5.0e-10 69.7 61 52.5
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.6e-08 64.7 88 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 6.1e-08 62.8 137 28.5


User provided reference genes

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