Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.2e-138 495.7 265 100.0
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.3e-74 281.2 157 92.4
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.5e-70 269.6 157 89.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.9e-62 243.4 157 79.0
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.3e-62 242.7 157 78.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 9.5e-62 241.1 157 78.3
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.1e-61 240.0 157 77.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 3.6e-61 239.2 157 77.1
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.2e-61 238.4 157 77.7
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-60 237.7 157 75.8
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.4e-60 237.3 157 77.1
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 4.0e-60 235.7 144 81.9
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.0e-60 235.7 157 75.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 6.8e-60 235.0 155 78.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 8.9e-60 234.6 155 76.8
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.0e-59 233.4 146 81.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 3.4e-59 232.6 157 75.2
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.6e-59 231.5 157 74.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.3e-58 230.7 156 76.9
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.7e-58 230.3 146 79.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.2e-58 229.9 155 75.5
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 4.9e-58 228.8 154 76.0
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 8.4e-58 228.0 146 79.5
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.4e-57 226.5 154 75.3
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.6e-56 223.8 211 60.7
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 6.0e-56 221.9 142 79.6
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 7.8e-56 221.5 157 73.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 7.8e-56 221.5 157 73.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.7e-55 220.3 143 78.3
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-55 220.3 147 79.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.7e-55 220.3 157 72.6
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 3.0e-55 219.5 157 73.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 5.1e-55 218.8 142 78.9
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 6.6e-55 218.4 158 74.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.5e-54 217.2 155 75.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.5e-54 216.5 147 78.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.5e-54 216.5 147 78.2
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.3e-54 216.1 167 69.5
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 9.6e-54 214.5 143 80.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.2e-53 211.8 166 69.3
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 8.1e-53 211.5 158 72.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.1e-52 211.1 156 72.4
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.4e-52 210.7 129 83.7
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.4e-52 210.7 156 68.6
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.3e-52 208.8 159 71.1
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.2e-51 207.6 156 71.2
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.6e-51 206.5 156 71.2
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.4e-51 206.1 157 69.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 9.9e-51 204.5 153 73.9
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.9e-50 202.2 155 69.0
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.1e-49 201.1 159 67.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.1e-49 201.1 155 70.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.9e-49 200.3 155 71.0
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 3.2e-49 199.5 157 66.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 4.2e-49 199.1 155 69.7
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 7.1e-49 198.4 156 68.6
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 9.3e-49 198.0 157 66.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.3e-49 198.0 156 67.9
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.3e-49 198.0 156 67.9
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.6e-48 197.2 156 67.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.1e-48 196.8 157 69.4
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-48 196.8 156 67.3
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.7e-48 196.4 156 67.3
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.6e-48 195.7 140 71.4
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.0e-48 195.3 158 68.4
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-47 194.5 155 67.7
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-47 194.5 155 67.7
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.7e-47 193.7 159 66.7
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 6.6e-47 191.8 159 66.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 6.6e-47 191.8 157 65.6
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.7e-47 191.4 155 67.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.5e-46 190.7 210 54.8
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.5e-46 190.7 155 65.8
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.9e-46 190.3 140 69.3
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.5e-46 189.9 160 65.0
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 5.6e-46 188.7 155 65.2
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.8e-45 186.4 157 64.3
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.1e-45 184.9 144 71.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 8.1e-45 184.9 155 63.9
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.1e-45 184.9 159 65.4
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-44 184.5 153 65.4
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.4e-44 184.1 153 64.7
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.8e-44 183.7 159 64.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.0e-44 182.6 157 64.3
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 4.0e-44 182.6 156 66.0
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 6.9e-44 181.8 158 64.6
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.9e-44 181.8 156 67.3
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 9.0e-44 181.4 153 63.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.0e-44 181.4 156 66.7
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-43 181.0 156 66.7
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 4.5e-43 179.1 156 66.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 4.5e-43 179.1 140 67.9
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.7e-42 177.2 159 62.9
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.7e-42 177.2 139 70.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.7e-42 177.2 139 70.5
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.2e-42 176.8 156 64.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.9e-42 175.6 155 61.3
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 6.4e-42 175.3 123 74.8
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 8.4e-42 174.9 157 59.9
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.4e-42 174.9 155 60.0
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-41 174.5 152 63.2
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.4e-41 174.1 155 61.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.4e-41 173.3 184 54.3
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 7.1e-41 171.8 157 56.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 9.3e-41 171.4 156 58.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.2e-40 171.0 156 64.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.1e-40 170.2 146 62.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-40 170.2 146 64.4
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 7.9e-40 168.3 157 60.5
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.3e-39 167.5 172 57.6
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-39 167.2 158 62.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.8e-39 167.2 146 63.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.3e-39 166.8 125 69.6
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.9e-39 166.0 157 59.9
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.9e-38 163.7 160 55.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.3e-38 162.9 93 87.1
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.3e-38 162.5 93 84.9
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 9.6e-38 161.4 130 68.5
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.3e-37 161.0 166 59.6
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 8.1e-37 158.3 112 72.3
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.3e-36 155.6 156 55.1
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 6.9e-36 155.2 157 57.3
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 6.9e-36 155.2 148 57.4
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.5e-35 154.1 123 67.5
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.6e-35 153.3 156 54.5
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 3.4e-35 152.9 141 61.0
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.5e-35 152.5 153 54.2
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 4.5e-35 152.5 98 77.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 7.6e-35 151.8 142 59.2
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 7.6e-35 151.8 142 59.2
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 7.6e-35 151.8 142 59.2
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.3e-34 151.0 143 58.7
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.3e-34 151.0 95 83.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.7e-34 150.6 269 40.1
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.7e-34 150.6 157 56.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 3.8e-34 149.4 93 75.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 8.4e-34 148.3 167 53.9
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.4e-33 147.5 142 57.0
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.2e-33 146.0 163 54.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.1e-33 145.2 143 58.0
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.2e-32 144.4 138 58.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.1e-32 143.7 101 72.3
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.5e-32 142.9 119 66.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 6.0e-32 142.1 143 56.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 8.7e-31 138.3 178 49.4
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.9e-30 137.1 96 70.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.3e-30 136.3 144 57.6
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 5.7e-30 135.6 158 50.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 5.7e-30 135.6 127 59.8
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.3e-29 134.4 102 66.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.6e-29 134.0 152 51.3
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.1e-28 129.8 160 49.4
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.3e-28 129.0 103 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.2e-27 127.9 140 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.5e-27 127.5 139 54.0
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-27 126.7 148 52.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.5e-27 125.9 125 54.4
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.7e-26 124.0 94 68.1
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.5e-25 120.2 155 46.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.3e-25 118.2 92 65.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.1e-20 103.2 170 42.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 6.9e-20 102.1 137 48.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.6e-19 100.1 89 66.3
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.4e-17 94.4 77 58.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 9.4e-17 91.7 86 62.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.4e-17 91.7 89 59.6
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.2e-16 91.3 85 51.8
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.8e-15 87.4 87 60.9
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 5.1e-15 85.9 60 71.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 8.8e-15 85.1 88 55.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 8.2e-13 78.6 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-11 74.7 58 63.8
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.5e-11 72.8 58 63.8
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-09 67.4 66 50.0
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 5.5e-09 65.9 86 45.3
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.7e-08 63.5 62 56.5
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.1e-08 62.4 76 47.4
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 2.0e-06 57.4 63 54.0


User provided reference genes

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