Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 0.0e+00 1211.8 638 100.0
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.1e-257 893.3 638 74.0
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 2.6e-182 642.9 644 53.7
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 7.2e-156 555.1 654 48.9
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 8.5e-149 531.6 650 47.1
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 6.7e-146 521.9 647 47.3
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 2.0e-145 520.4 668 46.9
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 1.7e-141 507.3 647 45.7
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 3.8e-141 506.1 657 45.8
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 4.7e-139 499.2 644 45.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 6.8e-138 495.4 646 46.0
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 2.8e-136 490.0 644 44.9
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 5.4e-135 485.7 596 47.3
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 9.1e-135 485.0 653 45.2
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.3e-133 480.3 651 45.8
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 2.3e-133 480.3 651 45.6
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.5e-132 477.6 651 45.6
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 2.5e-132 476.9 648 44.3
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 2.5e-132 476.9 646 44.6
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 5.2e-130 469.2 646 43.8
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 2.0e-129 467.2 653 44.0
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 9.2e-127 458.4 643 43.4
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.7e-126 456.8 632 43.7
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.3e-125 453.8 603 45.6
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.9e-124 450.7 649 41.8
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 2.8e-123 446.8 650 42.3
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 2.0e-121 440.7 656 43.0
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 7.5e-121 438.7 644 41.8
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.2e-119 433.3 599 43.9
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 5.4e-119 432.6 652 41.9
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 6.0e-118 429.1 1007 32.2
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 1.3e-117 427.9 654 41.9
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 3.9e-117 426.4 649 41.0
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 3.9e-117 426.4 654 41.6
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 9.5e-116 421.8 650 41.2
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 1.6e-115 421.0 644 40.5
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 2.8e-115 420.2 650 40.2
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 1.4e-114 417.9 646 41.3
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.5e-113 414.5 652 40.8
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 9.8e-113 411.8 657 40.5
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.3e-109 401.4 645 39.2
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 3.0e-109 400.2 626 40.9
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.9e-108 397.5 644 40.2
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.3e-108 396.7 595 41.8
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 2.1e-107 394.0 649 39.0
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.1e-106 391.7 659 38.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 5.8e-105 386.0 489 47.0
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 7.5e-105 385.6 737 38.8
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.4e-103 381.3 584 42.3
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 2.4e-103 380.6 641 38.4
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.2e-103 380.2 605 39.2
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 2.1e-102 377.5 653 38.9
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.7e-102 377.1 572 42.1
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 3.0e-101 373.6 650 39.1
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 3.3e-100 370.2 422 50.7
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 9.5e-100 368.6 643 38.1
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 2.1e-99 367.5 644 38.5
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 2.8e-99 367.1 551 40.8
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 6.8e-98 362.5 640 37.7
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 3.2e-95 353.6 607 38.6
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 9.2e-95 352.1 572 40.7
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 4.6e-94 349.7 417 50.1
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 6.0e-94 349.4 644 36.2
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.0e-93 348.6 624 37.7
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 2.3e-93 347.4 648 36.7
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 3.9e-93 346.7 650 37.1
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 5.6e-92 342.8 654 36.9
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 7.3e-92 342.4 654 37.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 4.7e-91 339.7 655 36.9
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 6.2e-91 339.3 656 36.9
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.1e-90 338.6 597 37.4
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.8e-90 337.8 644 36.8
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 6.9e-90 335.9 655 36.3
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 6.9e-90 335.9 654 36.9
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 1.3e-88 331.6 412 45.9
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 1.1e-87 328.6 653 36.0
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.9e-87 327.8 646 34.4
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 2.7e-86 323.9 638 35.3
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 1.8e-82 311.2 647 33.8
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.1e-82 310.5 641 33.7
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 1.4e-79 301.6 657 32.4
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 2.4e-79 300.8 654 32.1
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.3e-77 295.0 500 38.6
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.5e-76 290.8 497 38.4
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 3.4e-73 280.4 460 40.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 3.8e-72 276.9 316 49.1
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 6.0e-70 269.6 611 34.5
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 6.9e-66 256.1 171 78.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 4.5e-65 253.4 335 45.1
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 1.3e-64 251.9 392 40.8
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.1e-63 248.8 336 47.9
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 1.0e-61 242.3 657 29.5
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 6.7e-61 239.6 593 31.2
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 7.4e-60 236.1 283 46.6
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 7.2e-47 193.0 251 47.0
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 4.8e-43 180.3 280 40.7
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 5.2e-37 160.2 413 30.5
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 6.7e-37 159.8 117 63.2
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 1.8e-34 151.8 666 24.6
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.1e-34 150.6 584 23.6
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.2e-33 149.1 133 56.4
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 1.8e-29 135.2 116 55.2
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 1.8e-26 125.2 77 70.1
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 2.4e-26 124.8 116 51.7
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.1e-26 124.0 435 27.4
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 2.7e-25 121.3 147 47.6
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 2.0e-20 105.1 265 34.0
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 2.6e-20 104.8 90 61.1
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 2.8e-19 101.3 171 38.6
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 4.1e-18 97.4 141 40.4
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.1e-15 89.4 656 22.9
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 2.5e-15 88.2 136 39.0
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.2e-14 85.9 145 39.3
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.4e-13 82.4 652 20.2
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.3e-13 81.6 127 39.4
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 3.0e-13 81.3 138 39.1
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 3.0e-13 81.3 138 39.1
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 3.0e-13 81.3 117 40.2
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 2.6e-12 78.2 115 40.9
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 2.6e-12 78.2 115 40.9
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 2.6e-12 78.2 115 40.9
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 1.7e-11 75.5 81 45.7
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 2.2e-11 75.1 74 50.0
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 6.3e-11 73.6 61 60.7
Atru.chr1.2967 Acer truncatum HOM05D005725 ORTHO05D007531 2.0e-09 68.6 87 50.6
SEGI_16346 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 6.6e-08 63.5 96 38.5
Gohir.A08G150800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.5e-07 61.6 102 36.3
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 5.6e-07 60.5 137 30.7
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 8.0e-06 56.6 57 42.1


User provided reference genes

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