Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.5e-77 292.7 145 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 5.1e-17 91.7 106 43.4
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.9e-16 89.7 124 40.3
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 9.7e-16 87.4 121 43.0
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 8.2e-15 84.3 101 44.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.1e-14 84.0 101 44.6
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.1e-14 84.0 124 37.9
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.4e-14 82.8 101 43.6
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.4e-14 82.8 101 43.6
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 3.1e-14 82.4 128 35.9
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 3.1e-14 82.4 128 35.9
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 3.1e-14 82.4 128 35.9
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 3.1e-14 82.4 114 39.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 3.1e-14 82.4 109 40.4
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 3.1e-14 82.4 101 43.6
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 3.1e-14 82.4 101 43.6
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 4.1e-14 82.0 134 34.3
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 4.1e-14 82.0 125 36.0
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 4.1e-14 82.0 101 43.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 5.3e-14 81.6 101 42.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 5.3e-14 81.6 127 36.2
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 6.9e-14 81.3 101 40.6
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 6.9e-14 81.3 101 42.6
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 6.9e-14 81.3 101 40.6
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 9.0e-14 80.9 127 35.4
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 9.0e-14 80.9 101 42.6
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 9.0e-14 80.9 101 42.6
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 9.0e-14 80.9 121 41.3
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 9.0e-14 80.9 101 40.6
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 9.0e-14 80.9 127 37.8
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 9.0e-14 80.9 101 42.6
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.2e-13 80.5 121 38.0
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.2e-13 80.5 101 42.6
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.5e-13 80.1 132 38.6
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.5e-13 80.1 101 42.6
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.5e-13 80.1 116 40.5
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.5e-13 80.1 121 37.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.5e-13 80.1 121 37.2
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.0e-13 79.7 101 41.6
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 2.0e-13 79.7 101 42.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 2.6e-13 79.3 101 41.6
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.6e-13 79.3 127 34.6
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.6e-13 79.3 127 34.6
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.6e-13 79.3 127 34.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.6e-13 79.3 101 40.6
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.4e-13 79.0 135 37.8
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.4e-13 79.0 101 40.6
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.4e-13 79.0 101 41.6
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 3.4e-13 79.0 101 41.6
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 3.4e-13 79.0 101 42.6
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 3.4e-13 79.0 121 38.8
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 4.5e-13 78.6 101 41.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 4.5e-13 78.6 101 40.6
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 4.5e-13 78.6 101 40.6
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 4.5e-13 78.6 122 36.9
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 4.5e-13 78.6 122 36.9
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 4.5e-13 78.6 121 36.4
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 5.9e-13 78.2 101 38.6
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 5.9e-13 78.2 121 38.0
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.9e-13 78.2 127 39.4
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 7.7e-13 77.8 125 34.4
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 7.7e-13 77.8 101 41.6
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 7.7e-13 77.8 101 41.6
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.0e-12 77.4 101 40.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-12 77.4 121 37.2
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.0e-12 77.4 127 38.6
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.0e-12 77.4 101 40.6
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 1.3e-12 77.0 127 34.6
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.3e-12 77.0 127 34.6
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.3e-12 77.0 121 37.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.3e-12 77.0 101 40.6
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.7e-12 76.6 127 34.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.7e-12 76.6 121 37.2
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.7e-12 76.6 125 37.6
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.7e-12 76.6 123 36.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.7e-12 76.6 101 41.6
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.7e-12 76.6 127 34.6
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 2.2e-12 76.3 118 36.4
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.2e-12 76.3 117 38.5
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.9e-12 75.9 125 34.4
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.9e-12 75.9 101 35.6
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 2.9e-12 75.9 101 35.6
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.9e-12 75.9 127 34.6
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 2.9e-12 75.9 101 41.6
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.9e-12 75.9 125 38.4
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.9e-12 75.9 117 36.8
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.9e-12 75.9 117 36.8
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.9e-12 75.9 101 40.6
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 2.9e-12 75.9 94 41.5
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 3.8e-12 75.5 101 40.6
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 5.0e-12 75.1 121 36.4
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 6.5e-12 74.7 101 38.6
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 6.5e-12 74.7 101 37.6
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 6.5e-12 74.7 101 37.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 8.5e-12 74.3 101 39.6
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 8.5e-12 74.3 97 41.2
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 8.5e-12 74.3 121 36.4
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.1e-11 73.9 125 36.8
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-11 73.6 101 36.6
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-11 73.6 101 36.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.4e-11 73.6 116 37.9
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.4e-11 73.6 118 37.3
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 2.5e-11 72.8 101 37.6
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 3.2e-11 72.4 143 34.3
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 7.2e-11 71.2 127 33.9
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 3.6e-10 68.9 131 32.1
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.8e-09 66.6 101 34.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.3e-09 66.2 139 33.1
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.8e-09 64.3 135 31.9
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.1e-08 63.9 129 32.6
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.5e-08 63.5 101 37.6


User provided reference genes

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