Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.5e-308 1062.0 538 100.0
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 7.7e-260 900.2 659 75.6
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.0e-188 661.4 521 73.1
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.8e-75 287.7 573 38.6
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.6e-71 274.6 566 37.6
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.6e-71 274.6 566 37.6
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 6.0e-71 272.7 560 39.1
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.9e-70 270.0 546 39.4
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 3.3e-69 266.9 567 38.4
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 7.4e-69 265.8 571 37.3
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.1e-67 261.9 562 37.2
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.4e-67 261.5 562 38.4
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 2.4e-67 260.8 628 36.9
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.5e-66 258.1 564 37.8
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 2.6e-66 257.3 620 37.3
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.6e-66 257.3 558 38.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.5e-66 256.5 572 36.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 4.5e-66 256.5 583 36.7
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 7.6e-66 255.8 577 37.1
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 7.6e-66 255.8 611 36.3
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 7.6e-66 255.8 563 38.5
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.6e-66 255.8 558 38.0
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 7.6e-66 255.8 601 36.1
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 9.9e-66 255.4 574 37.6
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.3e-65 255.0 577 37.4
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.3e-65 255.0 576 36.8
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 1.7e-65 254.6 628 36.5
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.7e-65 254.6 602 36.0
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 2.2e-65 254.2 612 36.3
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.8e-65 253.4 560 37.1
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 3.8e-65 253.4 563 36.8
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 6.4e-65 252.7 563 36.9
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 6.4e-65 252.7 611 36.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.4e-65 252.3 570 36.7
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.1e-64 251.9 617 36.5
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.1e-64 251.9 568 38.0
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.4e-64 251.5 569 37.4
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.4e-64 251.5 572 36.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.9e-64 251.1 568 36.1
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 2.4e-64 250.8 620 36.6
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.4e-64 250.8 629 37.0
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.4e-64 250.8 588 37.2
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.4e-64 250.8 573 36.8
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 3.2e-64 250.4 626 36.3
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 3.2e-64 250.4 557 37.7
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.2e-64 250.4 559 36.3
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 4.2e-64 250.0 460 41.7
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 5.5e-64 249.6 569 37.3
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 7.1e-64 249.2 602 36.0
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.3e-64 248.8 558 36.2
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.2e-63 248.4 589 37.9
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.2e-63 248.4 557 36.3
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.6e-63 248.1 555 37.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-63 247.7 570 37.2
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.1e-63 247.7 576 37.3
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 2.1e-63 247.7 562 38.1
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 2.7e-63 247.3 588 37.1
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.7e-63 247.3 606 36.5
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.7e-63 247.3 606 36.5
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.7e-63 247.3 613 35.4
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.7e-63 247.3 540 36.9
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.7e-63 247.3 540 36.9
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 3.5e-63 246.9 578 36.5
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.5e-63 246.9 549 37.2
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.5e-63 246.9 568 36.1
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 3.5e-63 246.9 562 36.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 3.5e-63 246.9 600 35.2
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 4.6e-63 246.5 565 37.2
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 4.6e-63 246.5 576 35.8
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 4.6e-63 246.5 588 36.7
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.0e-63 246.1 589 35.8
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.0e-63 246.1 589 35.8
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 7.9e-63 245.7 555 36.9
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 7.9e-63 245.7 558 36.4
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 7.9e-63 245.7 628 34.2
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.0e-62 245.4 552 37.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.8e-62 244.6 555 37.8
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.8e-62 244.6 578 36.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.8e-62 244.6 551 37.6
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-62 244.6 484 38.8
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.3e-62 244.2 564 36.5
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 3.0e-62 243.8 557 36.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.0e-62 243.8 606 36.3
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 3.9e-62 243.4 585 35.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 3.9e-62 243.4 619 34.4
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 3.9e-62 243.4 593 36.3
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 5.1e-62 243.0 572 36.4
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.1e-62 243.0 573 36.0
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.1e-61 241.9 558 36.6
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.5e-61 241.5 591 35.4
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 3.3e-61 240.4 553 37.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 3.3e-61 240.4 560 34.8
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.3e-61 240.4 453 39.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 9.6e-61 238.8 543 35.9
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 9.6e-61 238.8 587 35.8
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.3e-60 238.4 564 36.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.6e-60 238.0 555 35.9
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 2.1e-60 237.7 622 35.0
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 2.1e-60 237.7 577 36.7
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.1e-60 237.7 565 35.0
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.8e-60 237.3 575 34.4
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 2.8e-60 237.3 559 36.0
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 3.7e-60 236.9 563 35.5
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 6.2e-60 236.1 583 35.2
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 8.1e-60 235.7 570 35.3
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 8.1e-60 235.7 550 36.5
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.1e-59 235.3 608 35.0
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.4e-59 235.0 581 34.9
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.8e-59 234.6 570 35.1
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.1e-59 233.8 607 33.4
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 3.1e-59 233.8 578 36.0
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 4.0e-59 233.4 577 34.8
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 4.0e-59 233.4 565 34.9
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 5.3e-59 233.0 607 33.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.5e-58 231.5 565 35.4
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 2.0e-58 231.1 604 34.8
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.6e-58 230.7 578 34.8
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 3.4e-58 230.3 572 34.3
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.5e-58 229.9 488 38.3
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 4.5e-58 229.9 566 36.4
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.3e-57 228.4 352 44.3
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.7e-57 228.0 552 36.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.9e-57 226.5 577 35.0
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 6.5e-57 226.1 593 34.1
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.1e-56 225.3 556 36.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.5e-56 224.2 622 33.9
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.2e-56 223.4 624 33.7
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 5.5e-56 223.0 609 34.0
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-55 221.9 583 34.6
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.6e-55 221.5 590 34.2
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.6e-55 221.5 601 34.6
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.5e-55 220.3 536 36.0
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.5e-55 220.3 589 34.3
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 4.6e-55 219.9 167 73.7
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 5.1e-54 216.5 587 33.0
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.5e-53 214.9 605 34.0
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.9e-53 214.5 614 33.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.9e-53 214.5 510 34.7
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.3e-53 213.8 431 36.9
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.3e-53 213.8 532 35.5
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.1e-51 208.8 527 36.4
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.0e-50 204.5 329 41.6
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 2.6e-50 204.1 445 37.1
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.9e-49 200.7 607 32.3
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 6.5e-49 199.5 606 31.7
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.9e-48 198.0 564 34.0
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 8.2e-44 182.6 159 61.6
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.2e-42 178.7 582 31.3
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 7.7e-42 176.0 370 38.6
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.2e-39 168.7 533 28.7
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.6e-39 168.3 343 37.0
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 5.7e-37 159.8 528 31.4
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 3.4e-34 150.6 118 67.8
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 3.8e-33 147.1 485 31.3
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-31 142.1 283 36.7
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.6e-31 141.7 356 36.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 4.8e-28 130.2 179 54.2
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.8e-22 111.7 84 73.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.8e-20 104.4 170 41.8
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.7e-18 97.8 153 43.1
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 7.2e-16 89.7 78 66.7
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.2e-13 82.4 49 75.5
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.5e-13 82.0 72 55.6
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 2.0e-13 81.6 304 31.2
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.7e-12 78.6 195 37.4
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.3e-09 68.9 54 66.7
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 6.8e-06 56.6 83 42.2


User provided reference genes

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