Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.8e-263 911.4 451 100.0
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 9.2e-166 587.4 461 63.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 5.6e-163 578.2 413 66.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.6e-162 576.6 415 66.0
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.6e-162 576.6 417 65.7
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.2e-162 574.7 411 66.2
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 4.0e-161 572.0 410 65.1
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.9e-161 571.2 412 65.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 9.0e-161 570.9 412 65.5
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-160 570.1 412 64.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.0e-160 569.7 416 65.4
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.4e-160 568.5 414 64.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 5.8e-160 568.2 415 64.3
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 9.9e-160 567.4 415 64.1
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.2e-159 566.2 412 66.5
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.8e-159 565.5 412 63.6
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.9e-159 565.1 415 64.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.9e-159 565.1 413 63.9
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.4e-159 564.7 412 65.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.1e-158 563.9 434 61.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.2e-158 562.0 413 63.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.2e-158 562.0 410 63.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 7.1e-158 561.2 413 63.7
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.2e-157 560.5 412 64.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.2e-157 560.5 412 64.8
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-157 560.1 410 63.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.6e-157 560.1 415 62.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.1e-157 559.7 413 63.7
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.7e-157 559.3 413 63.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.7e-157 559.3 413 63.7
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.7e-157 559.3 413 63.7
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.7e-157 559.3 413 63.4
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.7e-157 559.3 413 63.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.5e-157 558.9 412 62.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.5e-157 558.9 413 64.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 4.6e-157 558.5 413 63.9
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 4.6e-157 558.5 412 62.9
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.6e-157 558.5 413 63.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 6.0e-157 558.1 412 62.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 6.0e-157 558.1 415 62.9
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.8e-157 557.8 412 63.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.8e-157 557.8 413 63.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.8e-157 557.8 413 63.7
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.8e-157 557.8 413 63.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 7.8e-157 557.8 413 63.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.0e-156 557.4 414 63.5
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-156 557.4 412 63.8
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.0e-156 557.4 412 63.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.0e-156 557.4 410 64.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.0e-156 557.4 412 62.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.3e-156 557.0 412 62.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.3e-156 557.0 412 64.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.3e-156 557.0 415 63.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.7e-156 556.6 416 63.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.3e-156 556.2 412 62.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.0e-156 555.8 413 63.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.0e-156 555.8 413 63.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.9e-156 555.4 414 62.8
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 6.6e-156 554.7 413 62.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.1e-155 553.9 411 62.8
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-155 553.9 413 62.5
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.9e-155 553.1 412 62.4
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.3e-155 552.4 414 63.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.3e-155 552.4 413 63.4
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 4.3e-155 552.0 413 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 5.6e-155 551.6 457 59.7
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.6e-155 551.6 430 61.4
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 7.3e-155 551.2 414 63.3
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 7.3e-155 551.2 413 62.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 9.6e-155 550.8 412 62.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 9.6e-155 550.8 413 63.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.3e-154 550.4 414 63.0
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.6e-154 550.1 414 62.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.6e-154 550.1 412 63.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.6e-154 550.1 415 62.4
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.6e-154 550.1 413 63.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.1e-154 549.7 412 62.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.1e-154 549.7 410 63.9
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.1e-154 549.7 410 63.7
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.8e-154 549.3 412 62.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.8e-154 549.3 433 61.7
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.8e-154 549.3 413 62.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.8e-154 549.3 430 62.1
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.6e-154 548.9 412 64.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.6e-154 548.9 413 62.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.6e-154 548.9 412 63.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 3.6e-154 548.9 413 63.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.6e-154 548.9 413 62.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 6.2e-154 548.1 413 62.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 6.2e-154 548.1 412 63.8
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.1e-153 547.4 412 63.3
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-153 547.0 413 62.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.4e-153 547.0 412 63.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.4e-153 547.0 415 61.9
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 2.4e-153 546.2 418 62.0
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 3.1e-153 545.8 410 63.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-153 545.8 410 63.4
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.0e-153 545.4 412 62.6
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-153 545.0 412 62.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.9e-153 544.7 412 62.4
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.0e-153 544.3 427 61.6
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.5e-152 543.5 412 62.4
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.5e-152 543.5 413 62.0
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.5e-152 543.5 413 62.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.0e-152 543.1 416 62.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.4e-152 542.3 407 65.1
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.8e-152 541.6 414 61.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-151 540.0 429 60.1
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.8e-151 538.9 413 61.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.4e-151 538.1 416 63.0
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 6.4e-151 538.1 410 61.5
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.1e-150 537.3 404 63.9
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.4e-150 537.0 429 59.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-150 537.0 453 57.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-150 536.6 419 62.1
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 9.3e-150 534.3 411 62.5
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.7e-149 532.7 429 59.4
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.5e-149 532.3 407 62.2
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.5e-149 532.3 412 61.7
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.6e-149 531.9 411 62.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.8e-148 530.0 413 60.8
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.7e-148 528.1 413 60.5
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 8.7e-148 527.7 417 62.6
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-147 527.3 445 58.0
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.4e-147 524.6 408 63.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 5.3e-145 518.5 427 60.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 6.9e-145 518.1 410 61.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.4e-142 509.6 417 59.5
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.2e-142 508.8 413 60.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 4.6e-141 505.4 490 52.7
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 8.7e-140 501.1 412 59.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.5e-139 500.4 361 64.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 5.6e-139 498.4 370 63.2
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.1e-137 492.7 413 57.6
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.5e-136 488.8 409 57.7
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 4.5e-136 488.8 357 62.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.6e-136 488.0 412 58.3
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.1e-134 484.2 360 63.6
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.2e-130 469.9 342 64.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 3.7e-130 469.2 342 66.4
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.1e-117 425.2 430 49.8
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 3.7e-114 416.0 502 43.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-112 411.0 321 59.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.5e-111 404.8 296 63.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 7.2e-110 401.7 466 46.8
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.6e-109 400.6 460 47.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.3e-106 391.0 466 45.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.7e-104 381.7 343 55.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-96 357.1 315 56.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.7e-96 356.7 221 74.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 7.2e-94 348.6 303 59.4
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 4.8e-90 335.9 284 57.7
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.6e-80 304.3 243 61.3
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-78 298.1 234 61.1
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.0e-71 273.5 197 62.9
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.6e-70 269.2 197 61.9
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-60 238.4 215 57.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 8.9e-60 235.3 226 52.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-56 223.8 162 66.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.2e-50 204.1 175 56.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.2e-49 200.3 160 61.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.1e-48 197.6 229 46.7
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.3e-46 190.3 124 71.8
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.3e-46 190.3 261 43.7
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.8e-43 179.5 178 51.1
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.4e-41 174.9 182 46.7
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 3.2e-41 173.7 156 54.5
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.0e-35 154.5 120 58.3
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.2e-33 146.7 337 32.3
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 7.9e-32 142.5 128 54.7
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.1e-30 138.7 126 54.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.3e-30 136.7 124 50.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-29 134.4 341 31.1
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 6.5e-26 122.9 95 54.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.7e-21 107.1 75 61.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.6e-19 100.9 70 65.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.6e-19 100.9 89 58.4
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.6e-16 91.7 126 42.9
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 7.2e-09 66.2 57 52.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.7e-08 64.3 300 22.0
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.3e-06 57.4 59 52.5


User provided reference genes

Program Settings