Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0106 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.6e-264 914.8 456 100.0
SMO145G0013 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.6e-115 419.9 468 51.1
Mapoly0033s0081 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.5e-18 96.3 369 30.1
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 6.5e-18 96.3 451 24.6
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 8.5e-18 95.9 458 23.8
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 8.5e-18 95.9 452 24.1
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 8.5e-18 95.9 345 28.4
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 5.5e-17 93.2 426 27.0
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 7.2e-17 92.8 346 26.9
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 2.1e-16 91.3 345 27.8
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 2.1e-16 91.3 345 26.4
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.7e-16 90.9 394 25.4
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 3.6e-16 90.5 355 26.8
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 4.7e-16 90.1 364 26.1
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 4.7e-16 90.1 421 24.5
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 8.0e-16 89.4 351 26.5
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 1.4e-15 88.6 459 23.5
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 1.4e-15 88.6 347 26.8
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 1.4e-15 88.6 421 26.1
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 2.3e-15 87.8 451 22.8
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 3.0e-15 87.4 348 26.4
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 5.2e-15 86.7 338 28.1
Mapoly0063s0022 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.2e-15 86.7 347 26.2
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 5.2e-15 86.7 351 26.2
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 6.8e-15 86.3 430 22.1
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 6.8e-15 86.3 347 25.9
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 8.8e-15 85.9 370 25.1
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 1.2e-14 85.5 334 24.9
MCO03G599 Micromonas commoda HOM05D003388 ORTHO05D003616 1.2e-14 85.5 330 26.4
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 1.2e-14 85.5 355 25.6
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 1.5e-14 85.1 345 26.1
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 1.5e-14 85.1 345 26.1
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 1.5e-14 85.1 344 27.0
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 2.6e-14 84.3 336 25.6
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 2.6e-14 84.3 346 26.6
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 2.6e-14 84.3 425 24.0
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 2.6e-14 84.3 346 25.7
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 2.6e-14 84.3 335 27.5
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 2.6e-14 84.3 229 30.6
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 2.6e-14 84.3 351 25.6
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 4.4e-14 83.6 464 23.1
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 4.4e-14 83.6 352 24.1
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.4e-14 83.6 413 23.0
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 5.7e-14 83.2 342 26.0
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 5.7e-14 83.2 342 25.4
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 5.7e-14 83.2 341 26.1
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 5.7e-14 83.2 350 28.0
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 7.5e-14 82.8 452 23.2
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 7.5e-14 82.8 350 24.6
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 9.8e-14 82.4 343 23.9
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 9.8e-14 82.4 346 25.4
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 9.8e-14 82.4 354 24.9
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 9.8e-14 82.4 339 25.4
SMO228G0086 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 9.8e-14 82.4 333 28.2
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.8e-14 82.4 413 23.0
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 1.3e-13 82.0 337 25.2
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 1.7e-13 81.6 353 26.1
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 1.7e-13 81.6 345 25.8
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 2.2e-13 81.3 224 29.5
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 2.2e-13 81.3 347 25.1
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 2.8e-13 80.9 338 26.0
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 2.8e-13 80.9 359 24.5
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 2.8e-13 80.9 352 25.6
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 2.8e-13 80.9 346 26.0
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 3.7e-13 80.5 345 25.5
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 3.7e-13 80.5 352 25.3
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 4.8e-13 80.1 343 25.7
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 4.8e-13 80.1 347 25.6
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 4.8e-13 80.1 340 25.6
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.8e-13 80.1 313 24.9
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 6.3e-13 79.7 467 23.8
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 1.1e-12 79.0 341 25.2
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 1.1e-12 79.0 346 26.9
SEGI_33704 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.1e-12 79.0 337 23.7
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 1.1e-12 79.0 338 26.9
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 1.4e-12 78.6 331 24.8
AagrBONN_evm.TU.Sc2ySwM_362.1319 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.8e-12 78.2 230 29.6
Pp3c2_8360 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.8e-12 78.2 348 23.3
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.8e-12 78.2 327 26.6
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 1.8e-12 78.2 346 25.7
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 2.4e-12 77.8 348 25.6
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 5.4e-12 76.6 354 24.6
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 5.4e-12 76.6 350 23.7
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 9.1e-12 75.9 351 25.6
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 9.1e-12 75.9 234 26.9
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 1.2e-11 75.5 347 23.3
Pp3c1_34190 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.2e-11 75.5 355 24.2
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 2.0e-11 74.7 210 28.1
Solyc05g007760.2 Solanum lycopersicum HOM05D003388 ORTHO05D003616 2.7e-11 74.3 218 29.4
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 4.5e-11 73.6 338 24.0
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 4.5e-11 73.6 345 24.6
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 5.9e-11 73.2 232 28.0
SMO137G0302 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.9e-11 73.2 348 26.1
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 5.9e-11 73.2 344 25.0
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 7.7e-11 72.8 349 25.2
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 7.7e-11 72.8 347 25.1
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 7.7e-11 72.8 347 22.2
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 7.7e-11 72.8 351 24.5
Mapoly0028s0125 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.0e-10 72.4 351 23.1
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.0e-10 72.4 319 24.8
SMO347G0589 Selaginella moellendorffii HOM05D002508 ORTHO05D003616 1.3e-10 72.0 337 24.0
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.7e-10 71.6 359 22.8
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 3.8e-10 70.5 231 25.5
FAN17G1342 Fragaria x ananassa HOM05D003388 ORTHO05D003616 5.0e-10 70.1 178 30.3
Pp3c17_14770 Physcomitrium patens HOM05D003388 ORTHO05D003616 5.0e-10 70.1 350 23.1
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 5.0e-10 70.1 349 24.4
Mapoly0009s0129 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.6e-10 69.7 328 27.7
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 1.5e-09 68.6 346 22.3
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 1.5e-09 68.6 345 23.2
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.9e-09 68.2 347 24.5
HPP92_007854 Vanilla planifolia HOM05D003388 ORTHO05D003616 2.5e-09 67.8 364 24.2
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 3.3e-09 67.4 355 20.8
SMO276G0050 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.2e-09 67.0 468 22.6
SMO196G0261 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.5e-09 66.6 311 26.0
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 1.2e-08 65.5 310 24.8
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 1.2e-08 65.5 330 22.4
Cre12.g553600 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 2.8e-08 64.3 75 42.7
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 4.7e-08 63.5 345 22.6
Mapoly0045s0136 Marchantia polymorpha HOM05D003388 ORTHO05D003616 4.7e-08 63.5 378 21.7
SEGI_24693 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 6.1e-08 63.2 344 23.3
Mapoly0045s0135 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.0e-07 62.4 376 21.0
AagrBONN_evm.TU.Sc2ySwM_362.2541 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.4e-07 62.0 171 26.9
AagrBONN_evm.TU.Sc2ySwM_228.716 Anthoceros agrestis HOM05D013582 ORTHO05D003616 6.8e-07 59.7 447 21.3
Pp3c11_18790 Physcomitrium patens HOM05D003388 ORTHO05D003616 8.9e-07 59.3 80 38.8
AagrBONN_evm.TU.Sc2ySwM_228.695 Anthoceros agrestis HOM05D013582 ORTHO05D003616 2.0e-06 58.2 388 22.4
Cre16.g694704 Chlamydomonas reinhardtii HOM05D003388 ORTHO05D003616 3.4e-06 57.4 75 36.0
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 7.5e-06 56.2 112 29.5
Pp3c16_17020 Physcomitrium patens HOM05D003388 ORTHO05D003616 9.8e-06 55.8 78 35.9


User provided reference genes

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