Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.5e-208 727.6 358 100.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.3e-124 448.4 365 63.3
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.9e-124 448.0 364 62.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 5.7e-118 428.3 378 59.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.8e-114 415.6 365 59.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.9e-113 413.3 375 57.6
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.2e-113 412.5 375 57.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.2e-112 410.6 377 54.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.1e-112 409.8 379 57.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.0e-112 407.9 376 57.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.8e-111 406.8 375 57.3
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.0e-111 406.0 375 56.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.2e-111 405.2 376 55.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 5.2e-111 405.2 374 55.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.6e-110 402.9 374 55.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.5e-110 401.4 380 54.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.3e-109 400.6 375 54.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.2e-109 399.8 373 55.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.8e-109 399.4 374 55.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.8e-109 399.4 375 54.7
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.8e-109 399.4 377 55.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 4.8e-109 398.7 375 54.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.1e-108 397.5 373 54.7
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.4e-108 397.1 376 54.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.8e-108 396.7 377 55.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.4e-108 396.4 375 55.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.4e-108 396.4 375 54.9
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.1e-108 396.0 375 53.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.1e-108 395.6 375 55.5
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 5.3e-108 395.2 376 54.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 7.0e-108 394.8 375 54.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 7.0e-108 394.8 375 55.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.2e-107 394.0 375 55.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-107 393.3 375 53.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.5e-107 392.5 375 54.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.5e-107 392.1 373 53.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.9e-107 391.7 380 55.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 5.9e-107 391.7 377 55.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.9e-107 391.7 374 55.6
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.7e-107 391.3 375 53.6
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 7.7e-107 391.3 373 53.9
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 7.7e-107 391.3 376 53.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.0e-106 391.0 364 53.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-106 390.6 380 52.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.3e-106 390.6 377 54.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.2e-106 389.8 364 55.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.2e-106 389.8 375 53.9
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.9e-106 389.4 362 56.1
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.9e-106 389.4 375 53.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.8e-106 389.0 372 53.2
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 5.0e-106 388.7 375 53.9
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.5e-106 388.3 375 53.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-105 387.5 362 54.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.1e-105 387.5 368 54.9
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.5e-105 387.1 375 54.1
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.5e-105 386.3 374 52.4
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.5e-105 386.3 353 56.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.5e-105 385.2 375 53.3
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.2e-105 384.8 380 53.2
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 7.2e-105 384.8 362 55.5
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 7.2e-105 384.8 380 53.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 9.4e-105 384.4 375 53.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.2e-104 384.0 376 53.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.6e-104 383.6 376 52.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.1e-104 383.3 379 54.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.1e-104 383.3 379 54.1
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.1e-104 383.3 375 53.3
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-104 382.9 386 52.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.7e-104 382.9 349 56.4
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 4.7e-104 382.1 376 53.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 6.1e-104 381.7 373 51.2
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 6.1e-104 381.7 376 52.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.0e-104 381.3 373 52.3
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-103 380.6 379 53.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.4e-103 380.6 376 52.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.8e-103 380.2 367 55.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.3e-103 379.8 377 52.8
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.3e-103 379.8 375 52.5
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.3e-103 379.8 375 52.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.3e-103 379.8 377 52.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.3e-103 379.8 376 52.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.0e-103 379.0 349 55.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-103 378.3 366 54.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.8e-103 378.3 366 54.1
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.8e-103 377.9 389 51.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.8e-103 377.9 363 52.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-102 377.5 366 54.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-102 377.5 376 52.1
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.2e-102 377.5 353 53.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-102 376.7 374 53.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-102 376.7 378 51.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-102 376.7 378 51.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.4e-102 375.9 376 52.9
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.4e-102 375.9 351 55.6
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.4e-102 375.6 377 52.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.7e-102 375.2 377 52.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.7e-102 375.2 377 52.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.7e-102 375.2 377 52.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 7.5e-102 374.8 376 52.1
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 7.5e-102 374.8 376 54.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.5e-102 374.8 377 53.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.3e-101 374.0 375 52.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.7e-101 373.6 371 52.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-101 372.9 379 53.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.8e-101 372.9 404 51.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.8e-101 372.9 404 51.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.8e-101 372.9 403 50.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.7e-101 372.5 376 52.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.8e-101 372.1 372 52.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.8e-101 372.1 332 57.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.3e-101 371.7 356 52.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.1e-100 369.4 400 50.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 4.1e-100 369.0 372 53.5
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 5.4e-100 368.6 374 52.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 7.0e-100 368.2 378 51.9
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 7.0e-100 368.2 378 51.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 9.1e-100 367.9 374 51.6
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.6e-99 367.1 365 51.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.0e-99 366.7 363 51.8
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.5e-99 365.9 376 52.4
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.5e-99 365.9 405 50.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.5e-99 365.9 386 52.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 3.5e-99 365.9 442 45.7
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.5e-99 365.5 396 50.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.5e-99 365.5 386 53.4
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.9e-99 365.2 361 53.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.9e-99 365.2 386 53.1
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.9e-99 365.2 386 52.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.9e-98 362.8 377 51.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 5.0e-98 362.1 372 50.8
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 6.5e-98 361.7 380 50.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 6.5e-98 361.7 383 52.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.5e-97 358.6 386 51.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.1e-96 356.7 423 47.3
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.2e-93 346.7 364 49.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.8e-90 335.9 364 49.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.0e-90 335.5 379 48.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.1e-88 330.1 447 43.2
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.4e-84 317.4 326 54.3
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.1e-84 315.8 495 39.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.9e-81 307.0 270 56.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.6e-80 303.9 350 48.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.8e-80 303.1 308 54.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.7e-80 302.4 307 53.1
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.2e-79 298.9 303 53.5
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.8e-78 294.7 305 53.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.4e-63 246.9 307 44.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.8e-56 223.4 435 37.5
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 8.1e-56 221.9 247 51.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.0e-55 218.4 173 59.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.4e-53 211.8 173 57.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.7e-50 204.1 263 46.8
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.9e-49 200.7 235 48.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.4e-44 184.5 201 52.7
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.3e-44 181.8 180 53.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.8e-38 162.5 213 43.2
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 9.3e-36 155.2 272 36.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-32 144.8 258 36.0
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 5.3e-31 139.4 615 24.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 7.1e-28 129.0 149 45.6
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-27 127.9 142 46.5
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 4.3e-25 119.8 140 50.0
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 4.2e-20 103.2 211 34.6
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.1e-19 100.9 95 48.4
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-18 97.1 80 57.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 5.1e-18 96.3 70 55.7
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.7e-18 95.9 321 29.9
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.7e-16 90.1 76 52.6
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-10 70.9 58 51.7
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-09 68.6 44 63.6


User provided reference genes

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