Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 8.9e-229 796.6 399 100.0
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 1.4e-101 374.0 416 47.1
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 1.9e-101 373.6 416 49.5
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 1.1e-98 364.4 414 49.5
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 1.9e-98 363.6 410 49.5
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 8.9e-96 354.8 412 48.3
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.0e-95 353.6 415 47.5
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.4e-95 352.4 418 47.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 7.6e-95 351.7 414 47.1
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.3e-94 350.9 415 48.2
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.2e-94 350.1 417 48.0
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 2.9e-94 349.7 414 47.8
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 2.9e-94 349.7 415 47.0
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 3.7e-94 349.4 413 48.4
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 4.9e-94 349.0 414 47.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.9e-94 349.0 416 48.6
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 8.4e-94 348.2 416 48.6
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.4e-93 347.4 418 48.3
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.4e-93 347.4 414 47.6
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 1.4e-93 347.4 414 47.6
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 3.2e-93 346.3 414 48.1
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.2e-93 346.3 410 47.6
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 3.2e-93 346.3 408 48.0
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.1e-93 345.9 413 47.7
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 4.1e-93 345.9 402 48.0
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 5.4e-93 345.5 415 46.5
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 5.4e-93 345.5 419 48.4
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 5.4e-93 345.5 401 48.4
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 5.4e-93 345.5 416 47.4
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 7.1e-93 345.1 416 47.4
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.2e-92 344.4 412 46.8
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.2e-92 344.4 412 46.8
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.6e-92 344.0 413 46.5
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 2.1e-92 343.6 413 47.2
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 2.1e-92 343.6 415 46.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 2.7e-92 343.2 415 47.2
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.5e-92 342.8 420 46.7
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 4.6e-92 342.4 414 47.8
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 7.8e-92 341.7 414 46.9
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.0e-91 341.3 414 47.3
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.0e-91 341.3 418 47.4
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.3e-91 340.9 419 47.7
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.7e-91 340.5 421 47.5
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.0e-91 339.7 415 46.5
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 3.0e-91 339.7 408 47.1
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 6.6e-91 338.6 416 47.6
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.5e-90 337.4 414 47.3
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.5e-90 337.4 415 46.7
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 1.9e-90 337.0 423 45.2
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.9e-90 337.0 416 47.1
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 5.6e-90 335.5 421 46.8
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 7.3e-90 335.1 414 47.8
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.3e-90 335.1 413 46.2
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 9.6e-90 334.7 412 46.4
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 9.6e-90 334.7 414 47.8
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 9.6e-90 334.7 405 46.9
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.2e-89 334.3 417 45.1
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.6e-89 334.0 418 46.2
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.1e-89 333.6 402 47.0
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 3.6e-89 332.8 412 45.9
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.6e-89 332.8 422 46.2
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 4.7e-89 332.4 406 46.6
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.7e-89 332.4 413 46.0
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 8.1e-89 331.6 415 46.5
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.1e-88 331.3 414 45.2
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.1e-88 331.3 420 46.2
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.1e-88 331.3 419 45.6
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.1e-88 331.3 414 46.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.4e-88 330.9 415 44.8
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.4e-88 330.9 413 46.7
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.4e-88 330.9 423 46.8
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.8e-88 330.5 415 44.3
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 2.4e-88 330.1 419 46.1
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 2.4e-88 330.1 414 46.9
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 3.1e-88 329.7 415 46.3
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 4.0e-88 329.3 413 44.6
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.2e-88 328.9 414 46.9
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 5.2e-88 328.9 420 45.7
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 6.8e-88 328.6 441 44.2
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 6.8e-88 328.6 423 45.9
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 6.8e-88 328.6 417 45.3
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 8.9e-88 328.2 409 46.2
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 2.0e-87 327.0 414 47.8
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.4e-87 326.2 420 46.4
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 4.4e-87 325.9 425 46.1
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 5.8e-87 325.5 420 46.2
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 7.6e-87 325.1 440 44.8
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 9.9e-87 324.7 404 47.0
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 9.9e-87 324.7 415 46.0
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 9.9e-87 324.7 413 46.5
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 9.9e-87 324.7 433 45.7
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 9.9e-87 324.7 402 47.0
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 1.7e-86 323.9 404 46.8
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.2e-86 323.6 415 46.3
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 3.8e-86 322.8 401 46.6
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 4.9e-86 322.4 411 46.2
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 8.4e-86 321.6 415 45.8
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 8.4e-86 321.6 401 45.9
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-85 321.2 418 45.7
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-85 321.2 418 45.7
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.1e-85 321.2 412 46.4
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.4e-85 320.9 419 45.6
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 3.2e-85 319.7 404 46.3
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.2e-85 319.3 406 46.6
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 5.4e-85 318.9 410 45.9
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 7.1e-85 318.5 418 45.5
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 9.3e-85 318.2 419 45.6
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.6e-84 317.4 412 46.1
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 2.1e-84 317.0 406 44.8
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 3.5e-84 316.2 409 45.0
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.6e-84 315.8 415 45.1
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.3e-83 314.3 417 43.6
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 1.7e-83 313.9 418 43.3
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.9e-83 312.8 410 45.4
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 5.1e-83 312.4 410 44.4
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 5.1e-83 312.4 415 44.6
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 5.6e-82 308.9 419 42.5
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 9.6e-82 308.1 464 42.7
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 6.2e-81 305.4 418 43.8
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 6.2e-81 305.4 418 43.8
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 6.2e-81 305.4 388 46.6
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.4e-80 304.3 406 46.3
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.4e-80 304.3 449 40.5
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.8e-80 303.9 403 43.4
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 4.0e-80 302.8 385 47.3
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 6.9e-80 302.0 406 43.6
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.5e-79 300.8 415 43.6
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.5e-79 300.8 410 43.9
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.5e-79 300.8 416 44.7
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 4.4e-79 299.3 421 43.9
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 9.9e-79 298.1 421 43.7
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.4e-77 294.3 416 43.8
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 3.2e-77 293.1 411 45.0
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 3.2e-77 293.1 378 45.2
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 7.9e-76 288.5 408 42.2
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 1.3e-75 287.7 433 41.8
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 1.7e-75 287.3 414 42.8
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 1.9e-74 283.9 363 44.1
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.9e-74 283.9 419 43.4
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.2e-71 274.6 322 47.5
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 4.9e-70 269.2 350 43.4
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 8.4e-70 268.5 365 43.3
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.9e-69 267.3 331 45.9
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 7.1e-69 265.4 341 42.5
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 4.6e-68 262.7 341 42.5
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 3.9e-67 259.6 280 50.4
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 6.2e-65 252.3 286 48.3
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.5e-63 247.7 427 39.6
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 8.4e-62 241.9 409 39.4
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.8e-59 234.2 398 40.2
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.1e-56 224.9 240 52.1
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 2.4e-56 223.8 316 42.7
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 7.2e-53 212.2 369 37.9
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.5e-50 203.8 381 37.8
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 1.6e-49 201.1 305 38.7
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.5e-47 193.0 258 45.3
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-46 191.8 387 36.2
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 2.8e-41 173.7 240 43.8
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 2.4e-40 170.6 310 34.8
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.2e-39 168.3 395 35.2
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 1.1e-29 135.2 242 37.2
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.1e-24 118.6 437 28.1
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 2.0e-23 114.4 219 35.6
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.0e-23 114.4 328 28.0
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 4.2e-21 106.7 219 35.2
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 3.4e-18 97.1 217 35.0
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 7.5e-18 95.9 108 43.5
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 2.4e-16 90.9 130 43.8
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 7.0e-16 89.4 118 45.8
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 9.1e-16 89.0 118 44.9
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 3.5e-15 87.0 139 38.8
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 5.0e-14 83.2 119 37.8
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 8.8e-11 72.4 63 52.4
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 3.7e-09 67.0 48 64.6
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 4.9e-09 66.6 92 43.5
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 6.3e-09 66.2 106 41.5
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 6.3e-09 66.2 149 32.9
MCO10G355 Micromonas commoda HOM05D003678 ORTHO05D004340 6.3e-09 66.2 134 32.1
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.4e-08 65.1 51 52.9
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 9.2e-08 62.4 66 50.0
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 1.0e-06 58.9 35 74.3
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 8.6e-06 55.8 101 36.6


User provided reference genes

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