Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 3.0e-215 751.5 367 100.0
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.2e-140 502.3 408 62.3
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 9.3e-140 500.7 408 62.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 7.8e-139 497.7 408 61.8
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 7.8e-139 497.7 408 61.8
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.3e-138 496.1 408 63.0
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.0e-138 495.7 404 62.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.0e-138 495.7 404 62.4
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 4.3e-137 491.9 406 61.1
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 4.3e-137 491.9 408 60.8
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.3e-137 491.9 404 62.4
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 7.3e-137 491.1 408 61.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.3e-136 490.3 406 60.8
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.6e-136 490.0 402 61.7
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-135 487.3 408 61.5
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.4e-135 486.9 408 61.5
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.3e-135 485.0 395 62.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.9e-135 484.6 395 61.8
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.5e-134 483.4 408 60.0
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.6e-134 482.6 405 59.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 3.4e-134 482.3 408 60.5
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 5.8e-134 481.5 411 59.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 5.8e-134 481.5 408 60.8
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 7.6e-134 481.1 408 60.3
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.6e-134 481.1 408 60.8
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.3e-133 480.3 402 61.7
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.3e-133 480.3 408 59.8
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-133 479.9 399 61.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.9e-133 479.2 408 60.3
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.8e-133 478.8 406 59.6
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 8.4e-133 477.6 409 60.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 8.4e-133 477.6 406 61.6
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 4.6e-131 471.9 410 59.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-131 471.9 402 60.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-131 471.9 402 60.4
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.6e-131 471.9 408 59.6
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 7.9e-131 471.1 412 57.8
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 7.9e-131 471.1 405 58.5
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.0e-130 470.7 406 59.1
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.0e-130 470.7 408 58.6
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.8e-130 469.9 405 58.5
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.0e-130 469.2 405 58.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 5.1e-130 468.4 407 58.2
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 5.1e-130 468.4 404 58.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 8.7e-130 467.6 404 58.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 8.7e-130 467.6 409 58.9
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.1e-129 467.2 408 59.1
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.9e-129 466.5 408 59.6
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.5e-129 466.1 396 58.6
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 2.5e-129 466.1 412 56.3
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.5e-129 466.1 408 57.6
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 4.3e-129 465.3 409 57.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 4.3e-129 465.3 389 60.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 4.3e-129 465.3 390 59.5
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.3e-128 463.8 390 59.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.3e-128 463.8 406 57.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.3e-128 463.8 389 59.4
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.6e-128 463.4 404 57.7
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.8e-128 462.6 407 59.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.7e-128 462.2 404 58.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 4.8e-128 461.8 412 57.0
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 1.1e-127 460.7 407 58.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.4e-127 460.3 401 57.6
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 2.4e-127 459.5 412 56.1
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.1e-127 459.1 398 59.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 3.1e-127 459.1 412 55.8
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.0e-127 458.8 398 59.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 4.0e-127 458.8 404 57.9
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 6.9e-127 458.0 321 70.4
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 9.0e-127 457.6 401 58.6
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 9.0e-127 457.6 390 59.2
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.2e-126 457.2 408 57.4
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.2e-126 457.2 408 58.6
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.5e-126 456.8 407 57.2
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.5e-126 456.8 406 56.4
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 2.0e-126 456.4 407 57.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 3.4e-126 455.7 412 55.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 3.4e-126 455.7 412 55.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 3.4e-126 455.7 412 55.6
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.5e-126 455.3 404 57.2
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 7.6e-126 454.5 408 56.9
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 9.9e-126 454.1 406 57.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 9.9e-126 454.1 409 56.7
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.3e-125 453.8 408 55.9
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.7e-125 453.4 436 55.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.8e-125 452.2 410 57.1
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.1e-124 450.7 405 57.8
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.2e-124 449.1 402 57.5
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 4.2e-124 448.7 405 57.3
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.1e-123 446.4 408 56.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.3e-122 443.7 408 55.9
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.3e-122 443.7 401 56.6
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.8e-122 443.4 410 56.3
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.3e-122 443.0 409 55.5
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 2.3e-122 443.0 401 56.6
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.9e-122 442.2 407 54.5
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.9e-122 442.2 400 55.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 8.7e-122 441.0 402 56.0
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 8.7e-122 441.0 402 56.2
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.5e-121 440.3 400 55.5
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 7.4e-121 438.0 401 55.4
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.8e-120 436.0 402 55.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.1e-119 434.1 402 56.7
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.4e-119 433.7 419 54.4
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 4.0e-119 432.2 400 56.8
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 5.3e-119 431.8 410 55.1
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.6e-118 429.5 403 55.3
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.4e-116 423.7 403 54.8
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.9e-116 423.3 403 54.8
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.2e-116 422.5 404 54.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 7.9e-115 417.9 408 55.6
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.0e-114 417.5 402 56.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-114 417.2 492 48.2
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 5.1e-114 415.2 404 53.5
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.1e-112 409.8 360 59.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 6.3e-112 408.3 347 59.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 1.8e-106 390.2 272 68.4
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.0e-106 389.4 408 50.7
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.1e-106 388.7 403 50.4
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.1e-103 380.9 409 50.6
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.2e-100 369.0 403 49.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 4.6e-99 365.5 272 64.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.7e-96 357.1 311 59.8
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.7e-96 357.1 416 46.9
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.6e-94 349.7 297 57.6
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.0e-85 321.2 315 53.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.5e-84 316.6 407 42.3
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 4.7e-83 312.4 312 52.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 7.5e-81 305.1 422 40.0
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.0e-73 280.4 408 41.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 2.7e-70 270.0 322 46.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 3.7e-64 249.6 263 51.0
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.4e-63 245.7 321 43.9
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.0e-62 243.8 176 65.9
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.0e-61 241.5 412 41.7
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.3e-61 241.1 161 72.0
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 5.7e-57 225.7 157 65.0
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.4e-55 221.1 190 59.5
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.2e-54 218.0 241 47.7
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 3.9e-53 213.0 135 75.6
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 7.3e-52 208.8 148 64.9
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.6e-46 191.0 154 62.3
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 4.6e-46 189.5 114 77.2
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.3e-45 188.0 327 34.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-37 161.8 212 42.9
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 5.2e-34 149.4 93 73.1
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 6.0e-30 136.0 173 46.8
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 7.8e-30 135.6 97 66.0
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.1e-18 98.6 226 31.0
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 6.9e-18 95.9 70 67.1


User provided reference genes

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