Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 3.4e-272 941.0 461 100.0
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 1.3e-53 214.9 156 68.6
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 8.3e-53 212.2 156 67.3
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 8.3e-53 212.2 156 67.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 1.8e-52 211.1 156 66.0
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 1.8e-52 211.1 156 67.3
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.8e-52 211.1 156 66.0
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.2e-51 208.4 156 66.7
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 1.2e-51 208.4 156 65.4
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.6e-51 208.0 156 66.0
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 2.0e-51 207.6 156 66.7
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 2.7e-51 207.2 156 65.4
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 3.5e-51 206.8 156 66.0
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 3.5e-51 206.8 156 67.3
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 4.5e-51 206.5 156 65.4
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 4.5e-51 206.5 156 65.4
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 65.4
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 66.0
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 65.4
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 65.4
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 66.7
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 7.7e-51 205.7 156 66.7
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 1.0e-50 205.3 156 64.7
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.3e-50 204.9 156 64.7
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 1.3e-50 204.9 156 64.7
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 1.3e-50 204.9 156 65.4
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.3e-50 204.9 156 66.0
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 1.7e-50 204.5 156 66.0
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.7e-50 204.5 156 64.7
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 2.3e-50 204.1 156 65.4
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 2.3e-50 204.1 156 64.7
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.3e-50 204.1 156 64.7
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 2.3e-50 204.1 156 64.7
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 2.9e-50 203.8 156 65.4
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 3.8e-50 203.4 156 64.7
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 3.8e-50 203.4 156 64.1
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.1
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 5.0e-50 203.0 156 64.7
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 6.5e-50 202.6 155 65.2
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 6.5e-50 202.6 156 62.8
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.5e-50 202.6 156 64.1
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 8.6e-50 202.2 156 64.1
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 8.6e-50 202.2 156 64.1
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 8.6e-50 202.2 174 59.8
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 8.6e-50 202.2 156 66.0
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 8.6e-50 202.2 156 62.2
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 1.1e-49 201.8 156 66.0
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.1e-49 201.8 156 63.5
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 1.1e-49 201.8 156 64.1
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 1.1e-49 201.8 156 64.7
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.1e-49 201.8 156 64.1
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 1.5e-49 201.4 162 62.3
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.5e-49 201.4 155 64.5
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.5e-49 201.4 156 62.2
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 1.5e-49 201.4 156 64.1
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.5e-49 200.7 156 63.5
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 2.5e-49 200.7 171 60.2
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 2.5e-49 200.7 171 60.2
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 3.2e-49 200.3 156 63.5
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 3.2e-49 200.3 156 64.1
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.2e-49 199.9 156 62.8
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 4.2e-49 199.9 156 63.5
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 4.2e-49 199.9 156 64.1
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 4.2e-49 199.9 156 62.2
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 4.2e-49 199.9 158 62.7
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 4.2e-49 199.9 156 62.8
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 5.5e-49 199.5 156 64.7
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 5.5e-49 199.5 156 62.8
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 5.5e-49 199.5 154 64.9
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 7.2e-49 199.1 163 62.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.2e-49 199.1 158 63.3
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 1.2e-48 198.4 156 64.1
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 1.2e-48 198.4 156 64.1
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 1.2e-48 198.4 156 62.8
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 1.6e-48 198.0 157 62.4
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 1.6e-48 198.0 170 60.0
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 1.6e-48 198.0 156 63.5
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 1.6e-48 198.0 156 63.5
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 1.6e-48 198.0 151 65.6
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 1.6e-48 198.0 156 64.1
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 1.6e-48 198.0 156 63.5
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 2.1e-48 197.6 156 65.4
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.1e-48 197.6 156 61.5
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.1e-48 197.6 174 58.0
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 2.1e-48 197.6 156 63.5
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 2.8e-48 197.2 156 61.5
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.6e-48 196.8 152 65.1
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 3.6e-48 196.8 156 64.1
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 3.6e-48 196.8 156 62.2
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 4.7e-48 196.4 156 61.5
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 6.1e-48 196.1 156 61.5
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 8.0e-48 195.7 156 64.7
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 8.0e-48 195.7 156 62.8
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 1.0e-47 195.3 155 61.9
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.0e-47 195.3 156 61.5
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.0e-47 195.3 157 62.4
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.4e-47 194.9 156 60.9
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 1.4e-47 194.9 170 60.0
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.3e-47 194.1 156 63.5
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 2.3e-47 194.1 156 61.5
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 2.3e-47 194.1 156 61.5
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 3.0e-47 193.7 156 62.8
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 3.0e-47 193.7 168 59.5
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 6.8e-47 192.6 164 58.5
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 6.8e-47 192.6 154 61.0
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 8.8e-47 192.2 156 60.9
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 1.2e-46 191.8 156 61.5
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 1.5e-46 191.4 154 61.7
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.6e-46 190.7 152 63.2
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.6e-46 190.7 152 63.2
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.6e-46 190.7 170 58.2
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 5.7e-46 189.5 156 59.0
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.3e-45 188.3 157 61.8
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 2.8e-45 187.2 155 60.6
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 4.9e-45 186.4 156 59.6
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.7e-43 180.6 156 59.0
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.5e-41 174.1 158 58.2
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 4.3e-41 173.3 155 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 7.3e-41 172.6 159 49.7
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 1.0e-39 168.7 154 49.4
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 2.6e-38 164.1 161 50.3
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 5.7e-38 162.9 155 48.4
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 8.3e-37 159.1 127 59.8
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 7.0e-36 156.0 157 49.0
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 1.6e-35 154.8 161 47.8
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.9e-33 147.9 118 64.4
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-31 142.1 117 61.5
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 5.8e-30 136.3 153 49.7
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 1.3e-29 135.2 156 43.6
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.6e-27 128.3 155 49.7
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 6.8e-23 112.8 105 53.3
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 6.8e-23 112.8 105 53.3
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.9e-23 112.5 96 57.3
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 1.5e-22 111.7 99 59.6
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.6e-22 110.9 129 48.8
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.2e-21 107.8 97 57.7
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 1.7e-18 98.2 99 51.5
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.1e-18 96.7 90 53.3
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 5.6e-17 93.2 158 34.2
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 2.6e-14 84.3 59 71.2
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 5.8e-14 83.2 59 69.5
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.9e-13 80.9 71 59.2
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 1.2e-08 65.5 62 56.5
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.1e-07 62.4 66 57.6
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-07 62.0 37 81.1
SHI03814 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-07 61.6 42 71.4
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.4e-07 61.2 103 38.8
SHI22837 Sapria himalayana HOM05D004750 ORTHO05D005598 2.4e-07 61.2 60 53.3
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 4.0e-07 60.5 37 75.7
SHI02882 Sapria himalayana HOM05D000942 ORTHO05D000918 5.2e-07 60.1 77 48.1
SHI27055 Sapria himalayana HOM05D004750 ORTHO05D006207 6.9e-07 59.7 37 78.4
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 2.0e-06 58.2 77 44.2
SHI36417 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-06 58.2 37 75.7


User provided reference genes

Program Settings