Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 0.0e+00 1836.2 905 100.0
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1112.1 902 63.2
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 1.2e-310 1069.7 905 61.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 8.8e-309 1063.5 906 61.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.4e-308 1061.6 925 59.8
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 5.7e-308 1060.8 901 60.2
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 9.8e-308 1060.1 912 60.0
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 2.2e-307 1058.9 898 60.6
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 4.8e-307 1057.7 923 59.3
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 5.4e-306 1054.3 902 60.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 3.5e-305 1051.6 906 60.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.4e-301 1039.6 902 60.2
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 3.4e-300 1035.0 900 58.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 4.4e-300 1034.6 851 62.4
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 9.8e-300 1033.5 901 58.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 1.8e-298 1029.2 903 59.8
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.4e-298 1027.7 901 58.6
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 5.6e-295 1017.7 902 59.8
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 5.8e-292 1007.7 899 58.7
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 2.2e-291 1005.7 894 58.2
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 1.8e-290 1002.7 904 58.2
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 9.2e-290 1000.3 903 56.8
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 4.7e-286 988.0 943 56.4
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 2.3e-285 985.7 898 57.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 6.8e-285 984.2 897 57.1
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 1.5e-284 983.0 898 56.9
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 3.4e-284 981.9 888 57.8
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 4.9e-283 978.0 900 57.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 8.3e-283 977.2 887 57.7
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 1.4e-282 976.5 902 57.5
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 1.4e-282 976.5 936 54.9
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.9e-282 976.1 892 56.4
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.9e-282 976.1 888 57.4
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 2.4e-282 975.7 901 57.3
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-282 975.7 910 56.4
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.2e-282 975.3 901 56.2
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 3.2e-282 975.3 896 57.9
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 4.1e-282 974.9 935 55.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 3.5e-281 971.8 906 56.5
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 1.0e-280 970.3 907 56.7
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.3e-280 969.9 911 56.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 1.7e-280 969.5 893 57.0
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.7e-280 969.5 953 54.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 3.0e-280 968.8 902 56.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 8.6e-280 967.2 914 55.0
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.5e-279 966.5 902 57.2
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 1.5e-279 966.5 896 56.8
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 2.5e-279 965.7 902 57.2
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 4.3e-279 964.9 700 66.3
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 5.6e-279 964.5 909 56.1
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 9.5e-279 963.8 701 65.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.6e-278 963.0 900 56.4
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 2.1e-278 962.6 902 56.1
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.8e-277 959.5 899 56.0
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 2.3e-277 959.1 876 57.0
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 4.0e-277 958.4 915 56.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.2e-276 956.8 909 55.7
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 1.5e-276 956.4 900 56.3
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.5e-276 954.1 945 54.0
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.3e-275 953.4 875 56.8
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 8.3e-275 950.7 731 64.0
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 3.5e-273 945.3 889 55.7
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 1.7e-272 943.0 994 51.6
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 1.7e-272 943.0 902 55.8
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 3.9e-272 941.8 879 56.9
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 6.2e-270 934.5 884 55.1
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.4e-269 933.3 880 54.9
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 8.9e-269 930.6 880 55.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.1e-266 923.7 896 55.2
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 6.6e-264 914.4 871 54.9
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 4.3e-263 911.8 701 63.3
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 7.3e-263 911.0 699 64.2
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.1e-262 909.4 909 54.9
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 1.1e-261 907.1 897 54.2
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.8e-261 906.4 881 54.6
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.8e-260 901.4 930 52.3
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.9e-260 900.6 938 52.0
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.8e-259 898.7 887 54.7
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.2e-257 893.6 703 62.0
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.6e-257 893.3 938 53.0
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.6e-254 883.2 1010 48.7
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 2.1e-254 882.9 881 54.4
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 2.8e-254 882.5 815 55.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 6.2e-254 881.3 687 62.4
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.2e-252 877.1 737 60.2
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 3.4e-252 875.5 882 53.6
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 6.4e-251 871.3 815 55.2
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.4e-250 870.2 783 57.5
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.4e-250 870.2 714 59.9
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 1.0e-248 864.0 660 64.4
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 3.8e-243 845.5 891 49.8
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.6e-241 840.1 900 50.0
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 3.0e-240 835.9 892 50.7
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.2e-236 823.9 666 60.5
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 6.3e-230 801.6 695 57.6
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 2.6e-228 796.2 909 49.5
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.0e-224 784.3 919 48.6
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.2e-209 734.2 784 49.6
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 1.9e-202 710.3 894 45.6
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.1e-201 706.8 611 59.9
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.9e-178 630.6 665 51.3
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.3e-176 623.6 809 43.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 2.2e-174 617.1 816 43.6
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.5e-162 577.0 818 40.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 3.9e-155 553.1 476 57.4
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 9.9e-143 511.9 780 39.2
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 3.2e-125 453.8 357 62.5
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.3e-115 421.0 364 59.1
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.5e-101 373.2 387 48.6
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 5.5e-93 346.7 369 52.0
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 3.7e-81 307.4 825 29.7
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.6e-79 302.0 314 51.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.2e-77 294.3 254 59.1
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.5e-74 285.4 245 59.2
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 1.0e-59 236.1 180 62.8
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 2.3e-59 235.0 188 60.1
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.7e-57 227.6 226 54.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-55 222.6 231 51.1
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.2e-48 198.0 175 58.9
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.2e-41 175.3 195 47.7
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 5.4e-32 144.1 111 57.7
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.1e-28 132.1 123 53.7
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 2.4e-27 128.6 84 73.8
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.8e-26 124.0 88 64.8
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.5e-21 109.4 146 45.9
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 4.8e-20 104.4 87 58.6
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 4.8e-20 104.4 137 44.5
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.2e-18 99.8 90 54.4
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.3e-17 96.3 141 39.7
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-16 92.0 93 47.3
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.4e-16 92.0 223 27.8
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.5e-16 90.9 87 49.4
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 6.0e-15 87.4 193 30.6
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 1.3e-14 86.3 135 40.0
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 5.1e-14 84.3 132 38.6
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 8.7e-14 83.6 41 90.2
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.5e-13 82.8 114 44.7
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 4.3e-13 81.3 107 44.9
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 8.1e-12 77.0 110 50.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 4.0e-11 74.7 55 60.0
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.5e-10 72.8 42 73.8
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.6e-10 72.0 61 60.7
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.0e-09 70.1 87 41.4
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.9e-09 68.6 41 73.2
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 2.5e-08 65.5 214 27.1
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.2e-08 65.1 89 38.2
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 9.3e-08 63.5 81 43.2
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 2.7e-07 62.0 132 28.8
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 3.5e-07 61.6 115 39.1
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.3e-06 58.9 67 43.3


User provided reference genes

Program Settings