Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.1e-279 963.8 484 100.0
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.5e-31 139.8 534 26.8
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 9.3e-31 139.0 471 28.7
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.1e-26 125.6 498 25.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.4e-26 125.2 442 27.8
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.1e-26 124.0 501 25.9
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.2e-25 122.1 348 29.3
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.6e-25 120.9 449 27.8
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 2.6e-25 120.9 374 28.3
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.3e-24 118.6 423 27.4
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.9e-24 117.5 338 29.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.4e-23 115.2 518 24.9
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.4e-23 115.2 401 27.4
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.2e-23 114.0 502 25.1
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 9.4e-23 112.5 533 24.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 7.9e-22 109.4 487 28.3
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.8e-21 108.2 322 28.6
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.3e-20 104.0 567 24.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 4.8e-19 100.1 355 28.5
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.4e-18 98.6 447 26.0
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.4e-18 97.8 364 26.6
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 5.3e-18 96.7 345 28.7
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 9.1e-18 95.9 328 28.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 3.4e-17 94.0 468 24.8
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.2e-16 91.3 341 27.0
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 2.9e-16 90.9 499 23.2
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 3.8e-16 90.5 353 26.3
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 5.0e-16 90.1 346 27.2
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.5e-16 89.7 493 22.9
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.9e-15 88.2 342 27.5
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 3.2e-15 87.4 436 25.5
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 4.2e-15 87.0 306 27.5
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.5e-15 86.7 486 24.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.6e-14 85.1 323 26.0
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.6e-14 85.1 229 28.4
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.1e-14 84.7 341 26.7
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.7e-14 83.6 499 22.8
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 6.1e-14 83.2 338 28.7
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-13 82.4 488 23.0
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 8.8e-13 79.3 363 25.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.5e-12 78.6 370 24.9
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.6e-12 77.8 225 30.2
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.3e-12 77.4 282 26.2
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.7e-11 75.1 100 40.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.2e-11 74.7 434 23.3
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.8e-11 74.3 360 25.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.7e-11 73.9 291 26.1
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.8e-10 71.6 244 29.5
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 3.1e-10 70.9 322 23.6
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 5.3e-10 70.1 326 26.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.2e-09 68.9 226 26.1
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.5e-09 68.6 341 22.9
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 4.5e-09 67.0 339 26.3
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 7.7e-09 66.2 210 24.3
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 3.8e-08 63.9 266 26.3
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 6.5e-08 63.2 183 26.2
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.5e-07 62.0 260 27.3
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.9e-07 61.6 381 23.1
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.5e-07 61.2 227 23.8
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 3.2e-07 60.8 412 22.6
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 5.5e-07 60.1 300 24.0
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 7.2e-07 59.7 99 37.4
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 7.2e-07 59.7 96 35.4
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 9.4e-07 59.3 149 30.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.2e-06 58.9 200 26.5
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.6e-06 58.5 249 24.9
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.6e-06 58.5 103 36.9
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 2.1e-06 58.2 263 25.9
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.1e-06 58.2 195 28.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.1e-06 58.2 250 27.6
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.7e-06 57.8 416 24.0
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 2.7e-06 57.8 355 22.3
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.7e-06 57.8 106 37.7
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 3.6e-06 57.4 410 22.7
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.7e-06 57.0 63 44.4
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 4.7e-06 57.0 214 26.6
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 4.7e-06 57.0 270 28.1
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.1e-06 56.6 265 26.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.1e-06 56.6 323 24.8


User provided reference genes

Program Settings