Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21930 Sapria himalayana HOM05D003001 ORTHO05D003494 1.6e-230 802.4 397 100.0
Ciclev10024998m.g Citrus clementina HOM05D003001 ORTHO05D003494 1.6e-44 184.5 237 48.5
TAR628G0470 Trochodendron aralioides HOM05D003001 ORTHO05D003494 8.7e-43 178.7 237 46.8
arahy.Tifrunner.gnm1.ann1.ZFLJ4E Arachis hypogaea HOM05D003001 ORTHO05D003494 1.9e-42 177.6 238 46.6
Atru.chr3.1345 Acer truncatum HOM05D003001 ORTHO05D003494 3.3e-42 176.8 237 46.0
Prupe.6G193100 Prunus persica HOM05D003001 ORTHO05D003494 5.7e-42 176.0 237 46.8
Dinv13233 Davidia involucrata HOM05D003001 ORTHO05D003494 1.3e-41 174.9 237 46.0
Sed0022187 Sechium edule HOM05D003001 ORTHO05D003494 1.3e-41 174.9 237 46.4
ClCG01G018590 Citrullus lanatus HOM05D003001 ORTHO05D003494 2.8e-41 173.7 237 45.6
MELO3C007738.2 Cucumis melo HOM05D003001 ORTHO05D003494 2.8e-41 173.7 237 45.6
CsaV3_6G045250 Cucumis sativus L. HOM05D003001 ORTHO05D003494 2.8e-41 173.7 237 45.6
Sed0027008 Sechium edule HOM05D003001 ORTHO05D003494 2.8e-41 173.7 237 45.6
FAN23G1555 Fragaria x ananassa HOM05D003001 ORTHO05D003494 3.7e-41 173.3 237 45.6
FAN28G1326 Fragaria x ananassa HOM05D003001 ORTHO05D003494 3.7e-41 173.3 237 45.6
Glyma.08G133200 Glycine max HOM05D003001 ORTHO05D003494 6.2e-41 172.6 237 44.7
VMungo0251G0868 Vigna mungo HOM05D003001 ORTHO05D003494 6.2e-41 172.6 236 44.1
Ca_16510_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 8.2e-41 172.2 237 45.1
Manes.12G130000 Manihot esculenta HOM05D003001 ORTHO05D003494 8.2e-41 172.2 237 45.1
Psat5g090840 Pisum sativum HOM05D003001 ORTHO05D003494 8.2e-41 172.2 237 45.1
PGR004G1126 Punica granatum HOM05D003001 ORTHO05D003494 8.2e-41 172.2 237 46.0
arahy.Tifrunner.gnm1.ann1.FN9T2Y Arachis hypogaea HOM05D003001 ORTHO05D003494 1.1e-40 171.8 237 45.1
MD01G1035600 Malus domestica HOM05D003001 ORTHO05D003494 1.1e-40 171.8 237 46.8
MD15G1320200 Malus domestica HOM05D003001 ORTHO05D003494 1.1e-40 171.8 237 46.8
Rhsim05G0104000 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.1e-40 171.8 237 44.7
TWI74G1411 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 1.1e-40 171.8 237 45.1
TPR.G16016 Trifolium pratense HOM05D003001 ORTHO05D003494 1.4e-40 171.4 237 45.6
Manes.13G096600 Manihot esculenta HOM05D003001 ORTHO05D003494 1.8e-40 171.0 237 45.1
Cfa002601 Carpinus fangiana HOM05D003001 ORTHO05D003494 3.1e-40 170.2 237 44.3
Lj6g0000592 Lotus japonicus HOM05D003001 ORTHO05D003494 3.1e-40 170.2 237 44.3
Lalb_Chr11g0075461 Lupinus albus HOM05D003001 ORTHO05D003494 3.1e-40 170.2 237 44.7
Medtr8g089925 Medicago truncatula HOM05D003001 ORTHO05D003494 3.1e-40 170.2 237 44.3
RcHm_v2.0_Chr2g0112391 Rosa chinensis HOM05D003001 ORTHO05D003494 3.1e-40 170.2 237 45.1
Glyma.11G242000 Glycine max HOM05D003001 ORTHO05D003494 4.1e-40 169.9 237 44.3
Glyma.18G015100 Glycine max HOM05D003001 ORTHO05D003494 4.1e-40 169.9 237 44.3
Potri.007G096900 Populus trichocarpa HOM05D003001 ORTHO05D003494 4.1e-40 169.9 237 45.6
Psat7g056400 Pisum sativum HOM05D003001 ORTHO05D003494 5.3e-40 169.5 237 44.3
Ah.02g126200 Amaranthus hybridus HOM05D003001 ORTHO05D003494 6.9e-40 169.1 237 46.0
Phvul.002G260900 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 6.9e-40 169.1 236 43.6
EL10As13g24055 Beta vulgaris HOM05D003001 ORTHO05D003494 9.0e-40 168.7 237 44.7
TPR.G6243 Trifolium pratense HOM05D003001 ORTHO05D003494 9.0e-40 168.7 228 44.7
FAN26G0078 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.2e-39 168.3 237 44.7
arahy.Tifrunner.gnm1.ann1.90QG24 Arachis hypogaea HOM05D003001 ORTHO05D003494 1.5e-39 167.9 228 45.6
Sabra07G0080200 Salix brachista HOM05D003001 ORTHO05D003494 1.5e-39 167.9 229 45.9
BraA06t26143Z Brassica rapa HOM05D003001 ORTHO05D003494 2.0e-39 167.5 258 42.2
Cpa.g.sc55.75 Carica papaya HOM05D003001 ORTHO05D003494 2.0e-39 167.5 237 44.7
FAN19G2704 Fragaria x ananassa HOM05D003001 ORTHO05D003494 2.6e-39 167.2 237 44.3
QL06p048139 Quercus lobata HOM05D003001 ORTHO05D003494 2.6e-39 167.2 237 43.5
Actinidia28043 Actinidia chinensis HOM05D003001 ORTHO05D003494 3.4e-39 166.8 237 43.9
Aqoxy6G00717 Aquilegia oxysepala HOM05D003001 ORTHO05D003494 3.4e-39 166.8 237 43.9
BcaB02g09889 Brassica carinata HOM05D003001 ORTHO05D003494 3.4e-39 166.8 237 44.7
Thhalv10003703m.g Eutrema salsugineum HOM05D003001 ORTHO05D003494 3.4e-39 166.8 237 43.9
Sabra05G0059000 Salix brachista HOM05D003001 ORTHO05D003494 4.5e-39 166.4 237 45.1
TWI53G0751 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 4.5e-39 166.4 237 43.5
AT5G65290 Arabidopsis thaliana HOM05D003001 ORTHO05D003494 5.8e-39 166.0 237 43.5
Gorai.007G235000 Gossypium raimondii HOM05D003001 ORTHO05D003494 5.8e-39 166.0 237 44.3
Sc03g0000160 Simmondsia chinensis HOM05D003001 ORTHO05D003494 5.8e-39 166.0 237 45.1
TAR625G1497 Trochodendron aralioides HOM05D003001 ORTHO05D003494 5.8e-39 166.0 237 43.5
vmacro19944 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 5.8e-39 166.0 237 42.6
A06p32150 Brassica napus HOM05D003001 ORTHO05D003494 7.6e-39 165.6 237 43.9
Duzib052G0813 Durio zibethinus HOM05D003001 ORTHO05D008190 7.6e-39 165.6 237 43.0
Sp2g28400 Schrenkiella parvula HOM05D003001 ORTHO05D003494 7.6e-39 165.6 237 43.5
AL8G42860 Arabidopsis lyrata HOM05D003001 ORTHO05D003494 1.0e-38 165.2 237 43.0
C03p60790 Brassica napus HOM05D003001 ORTHO05D003494 1.0e-38 165.2 238 43.3
GSVIVG01003429001 Vitis vinifera HOM05D003001 ORTHO05D003494 1.0e-38 165.2 237 43.9
BcaC03g18323 Brassica carinata HOM05D003001 ORTHO05D003494 1.3e-38 164.9 237 43.0
A02p43820 Brassica napus HOM05D003001 ORTHO05D003494 1.3e-38 164.9 237 43.0
C02p63980 Brassica napus HOM05D003001 ORTHO05D003494 1.3e-38 164.9 237 43.0
BraA02t09307Z Brassica rapa HOM05D003001 ORTHO05D003494 1.3e-38 164.9 237 43.0
Carub.0008s2617 Capsella rubella HOM05D003001 ORTHO05D003494 1.3e-38 164.9 237 43.0
Gohir.A11G204500 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.7e-38 164.5 237 43.9
Gohir.D11G218900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.7e-38 164.5 237 43.9
Medtr3g086840 Medicago truncatula HOM05D003001 ORTHO05D003494 1.7e-38 164.5 237 43.0
Aa31LG1G16660 Aethionema arabicum HOM05D003001 ORTHO05D003494 2.2e-38 164.1 237 43.0
ATR0684G114 Amborella trichopoda HOM05D003001 ORTHO05D003494 2.2e-38 164.1 237 42.6
BolC2t12465H Brassica oleracea HOM05D003001 ORTHO05D003494 2.9e-38 163.7 237 42.6
Actinidia30837 Actinidia chinensis HOM05D003001 ORTHO05D003494 3.8e-38 163.3 237 44.3
CARHR279240 Cardamine hirsuta HOM05D003001 ORTHO05D003494 3.8e-38 163.3 228 43.4
Cc07_g14610 Coffea canephora HOM05D003001 ORTHO05D003494 3.8e-38 163.3 235 44.3
Eucgr.I00540 Eucalyptus grandis HOM05D003001 ORTHO05D003494 3.8e-38 163.3 237 43.9
Hma1.2p1_0019F.1_g013790 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 3.8e-38 163.3 237 44.7
Dinv09007 Davidia involucrata HOM05D003001 ORTHO05D003494 5.0e-38 162.9 237 43.5
Potri.005G072100 Populus trichocarpa HOM05D003001 ORTHO05D003494 5.0e-38 162.9 235 44.7
THA.LOC104798827 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 5.0e-38 162.9 237 43.0
Cfa005658 Carpinus fangiana HOM05D003001 ORTHO05D003494 6.5e-38 162.5 236 41.9
Lj2A540G45 Lonicera japonica HOM05D003001 ORTHO05D003494 6.5e-38 162.5 236 44.1
Nn1g05454 Nelumbo nucifera HOM05D003001 ORTHO05D003494 6.5e-38 162.5 236 42.8
Migut.L00160 Erythranthe guttata HOM05D003001 ORTHO05D003494 8.4e-38 162.2 236 44.1
Os02g0758100 Oryza sativa ssp. japonica HOM05D003001 ORTHO05D003494 8.4e-38 162.2 237 42.6
AUR62027205 Chenopodium quinoa HOM05D003001 ORTHO05D003494 1.1e-37 161.8 228 45.2
Hund16555 Selenicereus undatus HOM05D003001 ORTHO05D003494 1.1e-37 161.8 237 42.6
BolC3t18338H Brassica oleracea HOM05D003001 ORTHO05D003494 1.4e-37 161.4 237 42.6
Nitab4.5_0000128g0230 Nicotiana tabacum HOM05D003001 ORTHO05D003494 1.9e-37 161.0 247 42.9
Sopen05g029900 Solanum pennellii HOM05D003001 ORTHO05D003494 1.9e-37 161.0 236 43.6
CiPaw.05G032800 Carya illinoinensis HOM05D003001 ORTHO05D003494 2.5e-37 160.6 236 41.5
Rhsim08G0013400 Rhododendron simsii HOM05D003001 ORTHO05D003494 2.5e-37 160.6 237 43.5
Thecc.01G095700 Theobroma cacao HOM05D003001 ORTHO05D003494 2.5e-37 160.6 237 43.5
MSTRG.3756 Avicennia marina HOM05D003001 ORTHO05D003494 4.2e-37 159.8 235 42.1
CAN.G712.16 Capsicum annuum HOM05D003001 ORTHO05D003494 4.2e-37 159.8 236 43.2
Solyc05g051490.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 4.2e-37 159.8 236 43.2
unitig_748.g8484 Utricularia gibba HOM05D003001 ORTHO05D003494 4.2e-37 159.8 235 43.0
MSTRG.15725 Avicennia marina HOM05D003001 ORTHO05D003494 5.5e-37 159.5 236 42.8
Lj4g0023349 Lotus japonicus HOM05D003001 ORTHO05D003494 5.5e-37 159.5 236 42.8
SalBow5G0007 Salvia bowleyana HOM05D003001 ORTHO05D003494 5.5e-37 159.5 226 43.8
SalBow5G4959 Salvia bowleyana HOM05D003001 ORTHO05D003494 5.5e-37 159.5 226 43.8
Thecc.02G134100 Theobroma cacao HOM05D003001 ORTHO05D003494 5.5e-37 159.5 237 41.8
Nn5g30003 Nelumbo nucifera HOM05D003001 ORTHO05D003494 7.1e-37 159.1 237 41.8
PSO210G4835 Papaver somniferum HOM05D003001 ORTHO05D003494 7.1e-37 159.1 237 43.0
TPR.G2848 Trifolium pratense HOM05D003001 ORTHO05D003494 7.1e-37 159.1 237 43.0
Zm00001eb255460 Zea mays HOM05D003001 ORTHO05D003494 7.1e-37 159.1 237 41.4
Oeu012395.2 Olea europaea HOM05D003001 ORTHO05D003494 9.3e-37 158.7 236 43.6
HPP92_011190 Vanilla planifolia HOM05D003001 ORTHO05D003494 1.2e-36 158.3 236 41.9
HPP92_011196 Vanilla planifolia HOM05D003001 ORTHO05D003494 1.2e-36 158.3 236 41.9
ECA236G2627 Erigeron canadensis HOM05D003001 ORTHO05D003494 1.6e-36 157.9 237 43.0
Duzib187G0783 Durio zibethinus HOM05D003001 ORTHO05D003494 2.1e-36 157.5 274 39.8
Hma1.2p1_0784F.1_g217160 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 2.1e-36 157.5 237 42.2
Hma1.2p1_0784F.1_g217165 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 2.1e-36 157.5 237 42.2
Nitab4.5_0000863g0110 Nicotiana tabacum HOM05D003001 ORTHO05D003494 2.1e-36 157.5 236 41.1
THA.LOC104807168 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 2.1e-36 157.5 237 42.2
HanXRQChr12g0380961 Helianthus annuus HOM05D003001 ORTHO05D003494 4.6e-36 156.4 229 42.8
DCAR_014204 Daucus carota HOM05D003001 ORTHO05D003494 7.9e-36 155.6 236 43.2
Gohir.D12G082300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.9e-36 155.6 238 43.3
Ca_08989_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 1.3e-35 154.8 246 41.1
Solyc01g105510.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 1.3e-35 154.8 236 41.1
Sopen01g047980 Solanum pennellii HOM05D003001 ORTHO05D003494 1.3e-35 154.8 236 41.1
arahy.Tifrunner.gnm1.ann1.7RAE92 Arachis hypogaea HOM05D003001 ORTHO05D003494 1.8e-35 154.5 237 42.2
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 1.8e-35 154.5 237 40.9
Haze_24852 Corylus avellana HOM05D003001 ORTHO05D003494 2.3e-35 154.1 246 41.5
Zm00001eb193930 Zea mays HOM05D003001 ORTHO05D003494 3.0e-35 153.7 237 40.9
arahy.Tifrunner.gnm1.ann1.P5X8WX Arachis hypogaea HOM05D003001 ORTHO05D003494 3.9e-35 153.3 228 44.3
Medtr4g094110 Medicago truncatula HOM05D003001 ORTHO05D003494 3.9e-35 153.3 237 41.8
Gohir.D12G016200 Gossypium hirsutum HOM05D003001 ORTHO05D003494 5.1e-35 152.9 227 41.9
Lalb_Chr05g0217601 Lupinus albus HOM05D003001 ORTHO05D003494 1.1e-34 151.8 237 40.5
Peaxi162Scf01060g00143 Petunia axillaris HOM05D003001 ORTHO05D003494 1.1e-34 151.8 236 40.3
CAN.G523.42 Capsicum annuum HOM05D003001 ORTHO05D003494 2.5e-34 150.6 235 40.0
Gorai.008G090800 Gossypium raimondii HOM05D003001 ORTHO05D003494 2.5e-34 150.6 238 41.6
Oeu019238.1 Olea europaea HOM05D003001 ORTHO05D003494 3.3e-34 150.2 236 40.3
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 4.3e-34 149.8 237 41.4
Gohir.A12G015900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 5.7e-34 149.4 227 41.4
Gorai.008G016400 Gossypium raimondii HOM05D003001 ORTHO05D003494 5.7e-34 149.4 227 41.4
Lalb_Chr07g0185321 Lupinus albus HOM05D003001 ORTHO05D003494 5.7e-34 149.4 237 41.8
Gohir.A03G175300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.4e-34 149.1 227 41.0
Psat7g100360 Pisum sativum HOM05D003001 ORTHO05D003494 7.4e-34 149.1 237 40.9
SalBow5G0708 Salvia bowleyana HOM05D003001 ORTHO05D003494 2.2e-33 147.5 236 39.0
Gorai.005G222800 Gossypium raimondii HOM05D003001 ORTHO05D003494 2.8e-33 147.1 227 40.5
HanXRQChr13g0420801 Helianthus annuus HOM05D003001 ORTHO05D003494 2.8e-33 147.1 237 41.4
DCAR_001772 Daucus carota HOM05D003001 ORTHO05D003494 8.2e-33 145.6 228 40.4
CANSAT01G1533 Cannabis sativa HOM05D003001 ORTHO05D003494 1.1e-32 145.2 219 44.3
Glyma.08G070500 Glycine max HOM05D003001 ORTHO05D003494 1.4e-32 144.8 230 41.3
Lsat_1_v5_gn_9_116840 Lactuca sativa HOM05D003001 ORTHO05D003494 2.4e-32 144.1 228 39.9
Cc02_g21210 Coffea canephora HOM05D003001 ORTHO05D003494 3.1e-32 143.7 246 40.2
unitig_61.g26059 Utricularia gibba HOM05D003001 ORTHO05D003494 4.1e-32 143.3 228 37.7
Lsat_1_v5_gn_5_45321 Lactuca sativa HOM05D003001 ORTHO05D003494 5.3e-32 142.9 236 40.7
FvH4_1g20250 Fragaria vesca HOM05D003001 ORTHO05D003494 1.7e-30 137.9 221 41.6
MBI02_g33225_MAGBIO Magnolia biondii HOM05D003001 ORTHO05D003494 3.8e-30 136.7 227 38.3
Peaxi162Scf00044g01218 Petunia axillaris HOM05D003001 ORTHO05D003494 5.0e-30 136.3 236 37.3
Lj5A234T86 Lonicera japonica HOM05D003001 ORTHO05D003494 1.1e-29 135.2 230 39.1
CiPaw.03G145700 Carya illinoinensis HOM05D003001 ORTHO05D003494 1.9e-29 134.4 219 41.1
Zm00001eb279320 Zea mays HOM05D003001 ORTHO05D003494 1.9e-29 134.4 237 35.4
Hund14102 Selenicereus undatus HOM05D003001 ORTHO05D003494 2.5e-29 134.0 85 76.5
Pp3c1_14780 Physcomitrium patens HOM05D003001 ORTHO05D003494 1.2e-28 131.7 227 37.0
Lsat_1_v5_gn_7_82321 Lactuca sativa HOM05D003001 ORTHO05D003494 2.7e-28 130.6 237 40.1
Nitab4.5_0003959g0040 Nicotiana tabacum HOM05D003001 ORTHO05D003494 6.1e-28 129.4 212 38.2
Mapoly0140s0040 Marchantia polymorpha HOM05D003001 ORTHO05D003494 7.9e-28 129.0 227 35.7
ECA246G2784 Erigeron canadensis HOM05D003001 ORTHO05D003494 1.0e-27 128.6 73 82.2
Duzib147G0326 Durio zibethinus HOM05D003001 ORTHO05D003494 3.0e-27 127.1 82 76.8
Pp3c11_13000 Physcomitrium patens HOM05D003001 ORTHO05D003494 3.0e-27 127.1 237 34.2
Lj4g0024063 Lotus japonicus HOM05D003001 ORTHO05D003494 3.9e-27 126.7 82 75.6
Oeu032367.1 Olea europaea HOM05D003001 ORTHO05D003494 2.0e-26 124.4 214 44.4
SEGI_30052 Sequoiadendron giganteum HOM05D003001 ORTHO05D003494 4.3e-26 123.2 79 73.4
Gohir.D02G198900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 5.7e-26 122.9 76 75.0
CDE10G0600 Ceratophyllum demersum HOM05D003001 ORTHO05D003494 9.7e-26 122.1 80 70.0
arahy.Tifrunner.gnm1.ann1.U0JFG5 Arachis hypogaea HOM05D003001 ORTHO05D003494 1.7e-25 121.3 237 37.1
VMungo0251G3475 Vigna mungo HOM05D003001 ORTHO05D003494 2.2e-25 120.9 82 70.7
DCAR_003467 Daucus carota HOM05D003001 ORTHO05D003494 6.3e-25 119.4 74 78.4
SMO144G0094 Selaginella moellendorffii HOM05D003001 ORTHO05D003494 1.1e-24 118.6 226 32.7
AagrBONN_evm.TU.Sc2ySwM_228.804 Anthoceros agrestis HOM05D003001 ORTHO05D003494 1.4e-24 118.2 237 32.5
Phvul.002G210800 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 1.8e-24 117.9 79 70.9
Haze_10579 Corylus avellana HOM05D003001 ORTHO05D003494 4.1e-24 116.7 74 74.3
CDE10G0920 Ceratophyllum demersum HOM05D003001 ORTHO05D003494 4.5e-23 113.2 72 72.2
COL.COLO4_32311 Corchorus olitorius HOM05D003001 ORTHO05D003494 5.9e-23 112.8 64 79.7
arahy.Tifrunner.gnm1.ann1.IZH4BU Arachis hypogaea HOM05D003001 ORTHO05D003494 6.5e-22 109.4 210 35.2
CBR_g24418 Chara braunii HOM05D003001 ORTHO05D003494 1.1e-16 92.0 72 56.9
Nitab4.5_0012818g0020 Nicotiana tabacum HOM05D003001 ORTHO05D003494 7.2e-13 79.3 50 78.0
PRCOL_00001902 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 6.3e-09 66.2 75 37.3
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.0e-06 58.9 40 75.0
SHI18000 Sapria himalayana HOM05D000083 ORTHO05D003582 5.0e-06 56.6 40 67.5


User provided reference genes

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