Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 4.5e-52 207.6 103 100.0
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 2.2e-14 82.4 43 90.7
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.4e-13 79.0 47 76.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 9.3e-13 77.0 46 80.4
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 1.2e-12 76.6 38 92.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 1.6e-12 76.3 46 78.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 1.6e-12 76.3 46 78.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 2.1e-12 75.9 46 78.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 2.7e-12 75.5 46 76.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.7e-12 75.5 44 79.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 2.7e-12 75.5 46 76.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 2.7e-12 75.5 46 76.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.7e-12 75.5 38 86.8
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 76.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 76.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 76.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 76.1
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 78.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 3.5e-12 75.1 44 79.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 3.5e-12 75.1 46 76.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 3.5e-12 75.1 38 81.6
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 4.6e-12 74.7 46 76.1
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 4.6e-12 74.7 46 76.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 4.6e-12 74.7 46 76.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 6.0e-12 74.3 45 75.6
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 6.0e-12 74.3 36 88.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 6.0e-12 74.3 46 76.1
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 76.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 76.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 73.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 76.1
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 76.1
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 7.8e-12 73.9 46 76.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.0e-11 73.6 39 84.6
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 1.3e-11 73.2 44 75.0
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 1.3e-11 73.2 74 56.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.3e-11 73.2 77 55.8
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.7e-11 72.8 44 75.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-11 72.8 74 56.8
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.7e-11 72.8 74 54.1
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 2.3e-11 72.4 44 72.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.0e-11 72.0 75 54.7
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 3.0e-11 72.0 46 71.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 3.0e-11 72.0 74 55.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 3.9e-11 71.6 73 54.8
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.9e-11 71.6 73 54.8
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.9e-11 71.6 44 72.7
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 3.9e-11 71.6 73 52.1
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 3.9e-11 71.6 73 54.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 5.1e-11 71.2 72 55.6
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 5.1e-11 71.2 73 53.4
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 5.1e-11 71.2 75 53.3
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 5.1e-11 71.2 71 52.1
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 5.1e-11 71.2 38 84.2
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 6.6e-11 70.9 73 53.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.6e-11 70.9 44 70.5
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 6.6e-11 70.9 72 55.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 6.6e-11 70.9 71 52.1
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 1.1e-10 70.1 71 53.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 1.9e-10 69.3 74 52.7
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.9e-10 69.3 72 54.2
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.5e-10 68.9 49 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.6e-10 67.8 36 83.3
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.1e-09 65.9 44 68.2
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.1e-09 65.9 71 49.3


User provided reference genes

Program Settings