Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17425 Sapria himalayana HOM05D005460 ORTHO05D018279 2.7e-43 178.3 94 100.0
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 6.1e-11 70.9 93 49.5
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 1.4e-10 69.7 75 53.3
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 1.8e-10 69.3 76 50.0
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 2.3e-10 68.9 55 65.5
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 3.0e-10 68.6 69 49.3
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 3.9e-10 68.2 85 50.6
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 8.8e-10 67.0 74 50.0
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.5e-09 66.2 73 52.1
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 3.3e-09 65.1 93 46.2
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 5.7e-09 64.3 56 58.9
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 9.7e-09 63.5 74 48.6
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 9.7e-09 63.5 52 61.5
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 1.7e-08 62.8 86 41.9
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 1.7e-08 62.8 84 45.2
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 1.7e-08 62.8 51 56.9
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 2.2e-08 62.4 50 58.0
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 2.2e-08 62.4 53 54.7
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 2.2e-08 62.4 92 41.3
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 2.2e-08 62.4 51 60.8
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 2.8e-08 62.0 99 43.4
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 3.7e-08 61.6 54 59.3
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 3.7e-08 61.6 74 50.0
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 3.7e-08 61.6 47 61.7
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 4.8e-08 61.2 48 62.5
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 8.2e-08 60.5 51 58.8
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 8.2e-08 60.5 80 45.0
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 1.1e-07 60.1 72 51.4
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 1.1e-07 60.1 72 51.4
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 1.1e-07 60.1 53 50.9
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 1.4e-07 59.7 74 45.9
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 1.4e-07 59.7 92 40.2
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 1.8e-07 59.3 52 51.9
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.8e-07 59.3 47 59.6
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.8e-07 59.3 47 59.6
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.8e-07 59.3 91 40.7
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.8e-07 59.3 91 40.7
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 2.4e-07 58.9 94 39.4
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 3.1e-07 58.5 48 62.5
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 3.1e-07 58.5 53 52.8
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 4.1e-07 58.2 48 62.5
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 4.1e-07 58.2 76 46.1
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 5.3e-07 57.8 80 45.0
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 5.3e-07 57.8 49 61.2
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 5.3e-07 57.8 51 56.9
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 6.9e-07 57.4 74 47.3
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 6.9e-07 57.4 90 40.0
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 6.9e-07 57.4 51 52.9
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 6.9e-07 57.4 46 58.7
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 9.1e-07 57.0 76 44.7
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 1.5e-06 56.2 47 57.4
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 1.5e-06 56.2 49 61.2
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 2.0e-06 55.8 94 39.4
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.0e-06 55.8 92 40.2
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.0e-06 55.8 92 40.2
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 2.6e-06 55.5 48 58.3


User provided reference genes

Program Settings