Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 0.0e+00 1326.6 672 100.0
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 1.2e-201 707.2 529 69.6
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 4.5e-201 705.3 531 69.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.9e-199 699.9 530 68.1
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 7.2e-199 698.0 531 67.8
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 1.6e-198 696.8 530 68.1
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 4.7e-198 695.3 531 67.8
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 4.7e-198 695.3 533 67.5
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 8.8e-197 691.0 531 67.2
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 8.8e-197 691.0 542 66.6
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 2.0e-196 689.9 530 67.5
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 2.6e-196 689.5 550 65.5
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 4.4e-196 688.7 529 67.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 5.7e-196 688.3 530 67.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 7.5e-196 688.0 532 67.3
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 7.5e-196 688.0 530 68.5
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 9.8e-196 687.6 531 67.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 1.7e-195 686.8 553 66.2
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.7e-195 686.8 530 68.1
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 4.9e-195 685.3 530 66.8
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 6.3e-195 684.9 532 66.4
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 1.8e-194 683.3 535 66.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 1.8e-194 683.3 532 66.5
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 2.4e-194 682.9 530 66.2
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 2.4e-194 682.9 531 66.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 3.1e-194 682.6 542 65.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 3.1e-194 682.6 564 64.2
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 4.1e-194 682.2 534 66.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 5.4e-194 681.8 535 66.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.6e-193 680.2 534 66.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.6e-193 680.2 532 65.8
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.6e-193 680.2 530 66.8
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 2.0e-193 679.9 532 66.4
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.0e-193 679.9 536 66.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 2.0e-193 679.9 530 65.7
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 3.5e-193 679.1 532 67.1
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 4.5e-193 678.7 530 65.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 4.5e-193 678.7 532 66.2
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 5.9e-193 678.3 531 66.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 7.7e-193 677.9 531 66.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-192 677.6 528 66.9
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 1.7e-192 676.8 532 66.0
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.3e-192 676.4 531 66.3
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 2.9e-192 676.0 531 65.7
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 2.9e-192 676.0 542 65.7
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 6.6e-192 674.9 550 63.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 1.5e-191 673.7 533 66.0
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 2.5e-191 672.9 530 65.1
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 2.5e-191 672.9 538 64.9
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 4.3e-191 672.2 533 66.2
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 7.3e-191 671.4 539 64.7
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 1.6e-190 670.2 536 65.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 2.1e-190 669.8 534 65.7
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 3.6e-190 669.1 532 65.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.6e-190 669.1 530 66.0
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.6e-190 669.1 536 64.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 3.6e-190 669.1 542 65.1
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 3.0e-189 666.0 538 64.7
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 3.0e-189 666.0 533 64.9
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 3.0e-189 666.0 533 64.7
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 4.0e-189 665.6 532 66.0
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 6.8e-189 664.8 546 63.9
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 6.8e-189 664.8 536 64.2
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.5e-188 663.7 530 65.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 2.0e-188 663.3 555 63.1
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 2.0e-188 663.3 531 65.5
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 4.4e-188 662.1 545 63.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-186 657.5 530 64.3
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-186 657.5 530 64.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 4.6e-185 652.1 530 64.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 4.6e-185 652.1 549 63.2
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 7.8e-185 651.4 544 63.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 7.8e-185 651.4 533 64.5
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 1.0e-184 651.0 533 63.2
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.3e-184 649.8 534 64.4
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 2.3e-184 649.8 533 64.4
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 3.0e-184 649.4 533 63.8
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 5.0e-184 648.7 546 63.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 1.9e-183 646.7 531 63.8
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.5e-183 646.4 545 62.8
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.5e-183 646.4 545 62.8
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 3.3e-183 646.0 590 59.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 3.3e-183 646.0 545 63.1
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.2e-182 644.0 533 63.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 1.2e-182 644.0 527 63.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 1.6e-182 643.7 544 63.4
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 3.6e-182 642.5 526 63.5
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 3.6e-182 642.5 534 63.1
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 6.2e-182 641.7 532 63.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 6.2e-182 641.7 532 63.0
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.0e-181 641.0 539 62.0
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 1.0e-181 641.0 521 64.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 1.8e-181 640.2 544 62.5
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 3.1e-181 639.4 541 63.2
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 1.5e-180 637.1 532 62.6
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 1.5e-180 637.1 532 62.6
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 3.4e-180 636.0 553 62.0
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 4.4e-180 635.6 532 62.4
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 1.8e-173 613.6 532 60.7
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 5.2e-173 612.1 548 59.3
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 9.8e-172 607.8 542 58.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 1.5e-167 594.0 531 60.5
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 1.5e-167 594.0 538 58.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 4.4e-164 582.4 460 65.7
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 1.3e-160 570.9 530 57.2
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 8.1e-158 561.6 470 63.8
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-157 558.9 534 55.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.7e-155 553.9 581 53.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 6.6e-152 542.0 501 58.5
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 4.8e-150 535.8 539 52.5
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 1.1e-135 488.0 538 52.4
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 5.8e-132 475.7 402 63.4
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.2e-131 473.8 298 77.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-127 460.3 299 76.6
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.1e-103 381.7 233 80.7
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.6e-100 370.5 297 65.3
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 7.2e-90 335.9 297 60.3
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 5.0e-83 313.2 577 35.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 8.3e-78 295.8 223 66.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-76 291.6 192 72.9
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-76 291.6 192 72.9
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.4e-71 273.5 157 80.9
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 8.3e-70 269.2 334 49.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.9e-62 244.2 452 39.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.9e-62 244.2 452 39.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.9e-61 241.5 536 31.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 9.2e-53 212.6 123 78.9
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.7e-52 211.1 123 79.7
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.2e-49 199.9 166 60.8
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.2e-47 195.7 159 67.3
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 4.4e-47 193.7 551 29.2
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.9e-46 191.0 157 62.4
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.9e-46 190.3 142 71.1
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 6.0e-44 183.3 145 62.1
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 6.6e-43 179.9 157 60.5
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 2.5e-42 177.9 338 36.1
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 7.1e-29 133.3 94 73.4
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.0e-28 130.2 165 50.9
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.8e-27 128.6 143 51.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.3e-27 128.3 77 77.9
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.9e-27 127.5 109 60.6
SHI07334 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-24 118.6 84 73.8
SHI12075 Sapria himalayana HOM05D000002 ORTHO05D000001 7.6e-23 113.2 103 62.1
SHI14083 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-22 111.3 103 62.1
SHI27156 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-21 107.8 114 57.0
SHI01664 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-20 104.4 103 59.2
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.3e-19 102.4 83 61.4
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.3e-19 101.7 70 70.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.6e-18 96.3 72 62.5
SHI24240 Sapria himalayana HOM05D007305 ORTHO05D009886 1.4e-16 92.4 82 64.6
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 2.0e-15 88.6 76 65.8
SHI31578 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-13 82.0 81 55.6
SHI27057 Sapria himalayana HOM05D007305 ORTHO05D009886 2.5e-13 81.6 88 52.3
SHI35106 Sapria himalayana HOM05D007305 ORTHO05D009886 7.1e-13 80.1 108 49.1
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 1.2e-12 79.3 47 87.2
SHI30681 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-10 72.4 101 42.6
SHI11625 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-09 68.6 96 41.7
SHI17479 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-09 68.2 81 48.1
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 3.7e-09 67.8 56 55.4
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-08 65.9 69 56.5
SHI34517 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-08 65.9 96 41.7
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 4.1e-08 64.3 113 38.9
SHI04754 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-08 63.9 96 40.6
SHI25004 Sapria himalayana HOM05D007305 ORTHO05D009886 5.3e-08 63.9 42 78.6
CANSAT78G0183 Cannabis sativa HOM05D000002 ORTHO05D000001 1.2e-07 62.8 131 37.4
SHI26071 Sapria himalayana HOM05D000002 ORTHO05D009886 3.4e-07 61.2 74 45.9
SHI20719 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-07 60.8 74 47.3
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.9e-07 60.5 45 62.2
SHI20574 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-07 60.1 78 42.3
SHI21600 Sapria himalayana HOM05D000002 ORTHO05D009886 1.0e-06 59.7 57 59.6
Manes.15G035050 Manihot esculenta HOM05D007305 ORTHO05D009886 1.7e-06 58.9 101 39.6
SHI17472 Sapria himalayana HOM05D000023 ORTHO05D000014 2.2e-06 58.5 35 88.6
SHI18518 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-06 58.5 106 36.8
SHI27433 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 58.2 96 38.5
SHI03751 Sapria himalayana HOM05D000023 ORTHO05D000014 5.0e-06 57.4 79 48.1
SHI27171 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-06 57.4 87 41.4
SHI09372 Sapria himalayana HOM05D002738 ORTHO05D000023 6.5e-06 57.0 35 85.7
Thecc.05G175700 Theobroma cacao HOM05D000002 ORTHO05D000001 8.5e-06 56.6 91 42.9


User provided reference genes

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