Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 1.1e-109 400.2 243 100.0
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 1.1e-45 187.6 170 58.2
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 4.4e-45 185.7 172 55.8
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 9.7e-45 184.5 173 55.5
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 9.7e-45 184.5 171 56.1
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 1.7e-44 183.7 177 54.8
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 4.8e-44 182.2 174 55.2
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 5.3e-43 178.7 172 54.7
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 9.1e-43 177.9 175 53.7
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 1.2e-42 177.6 173 56.6
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.6e-42 176.4 175 53.1
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 3.5e-42 176.0 166 59.0
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 3.5e-42 176.0 175 53.7
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 4.5e-42 175.6 175 53.7
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 5.9e-42 175.3 170 57.6
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 7.7e-42 174.9 170 57.6
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 7.7e-42 174.9 170 57.6
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 7.7e-42 174.9 170 57.6
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 7.7e-42 174.9 175 52.6
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 7.7e-42 174.9 173 54.3
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 1.0e-41 174.5 166 58.4
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.0e-41 174.5 168 53.6
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.0e-41 174.5 168 53.6
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.3e-41 174.1 172 55.2
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.3e-41 174.1 175 52.6
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.7e-41 173.7 174 52.9
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 2.2e-41 173.3 166 57.8
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.2e-41 173.3 171 53.8
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 5.0e-41 172.2 166 54.2
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 5.0e-41 172.2 167 53.9
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 5.0e-41 172.2 171 54.4
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 5.0e-41 172.2 173 54.3
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 8.5e-41 171.4 168 53.0
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 8.5e-41 171.4 174 52.9
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 8.5e-41 171.4 168 52.4
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 1.1e-40 171.0 171 55.6
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 1.1e-40 171.0 171 55.6
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 1.1e-40 171.0 171 55.6
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 1.1e-40 171.0 171 55.6
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.1e-40 171.0 165 54.5
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 1.1e-40 171.0 168 53.0
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.1e-40 171.0 165 53.9
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 1.5e-40 170.6 166 57.2
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 1.5e-40 170.6 175 52.0
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.9e-40 170.2 166 53.6
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.9e-40 170.2 175 52.6
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.9e-40 170.2 175 52.6
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 2.5e-40 169.9 171 52.6
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 2.5e-40 169.9 174 52.9
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 3.2e-40 169.5 171 56.1
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.5e-40 168.7 175 52.0
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 9.4e-40 167.9 165 53.9
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 1.2e-39 167.5 165 52.1
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 1.6e-39 167.2 165 52.1
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 2.1e-39 166.8 176 52.3
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 2.1e-39 166.8 165 52.7
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 2.7e-39 166.4 165 52.1
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 3.6e-39 166.0 176 51.1
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 3.6e-39 166.0 178 51.7
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 3.6e-39 166.0 167 50.9
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.7e-39 165.6 164 52.4
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.7e-39 165.6 165 51.5
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.7e-39 165.6 165 51.5
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 4.7e-39 165.6 165 52.1
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 4.7e-39 165.6 165 52.1
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 1.0e-38 164.5 167 50.3
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 1.4e-38 164.1 172 54.1
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 1.4e-38 164.1 177 49.7
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.4e-38 164.1 176 51.1
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 1.8e-38 163.7 180 50.6
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 2.3e-38 163.3 165 50.9
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.3e-38 163.3 166 51.8
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 2.3e-38 163.3 166 51.2
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 3.0e-38 162.9 167 50.9
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 3.0e-38 162.9 169 50.9
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 3.0e-38 162.9 187 49.7
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 5.2e-38 162.2 165 50.9
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 1.2e-37 161.0 169 49.1
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 1.5e-37 160.6 166 51.8
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 1.5e-37 160.6 164 51.2
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 1.5e-37 160.6 166 51.2
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.5e-37 160.6 179 48.0
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 2.0e-37 160.2 164 52.4
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 2.0e-37 160.2 166 51.8
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 3.4e-37 159.5 167 50.9
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 5.7e-37 158.7 165 50.9
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 5.7e-37 158.7 166 51.2
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 7.5e-37 158.3 165 50.9
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 7.5e-37 158.3 165 50.9
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 1.3e-36 157.5 164 51.8
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.7e-36 157.1 165 50.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.8e-36 156.4 142 58.5
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 2.8e-36 156.4 165 50.9
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 6.3e-36 155.2 164 48.8
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 6.3e-36 155.2 147 53.1
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 8.3e-36 154.8 167 49.1
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 8.3e-36 154.8 175 49.1
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 1.4e-35 154.1 139 57.6
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 2.4e-35 153.3 176 50.0
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 2.4e-35 153.3 141 57.4
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 2.4e-35 153.3 141 57.4
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 3.1e-35 152.9 168 51.8
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 3.1e-35 152.9 171 48.5
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 7.0e-35 151.8 141 56.7
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 9.1e-35 151.4 141 56.7
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 9.1e-35 151.4 140 55.0
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 1.6e-34 150.6 139 59.7
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 1.6e-34 150.6 139 59.7
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.0e-34 150.2 168 50.0
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 3.5e-34 149.4 166 48.8
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 5.9e-34 148.7 171 49.7
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 7.7e-34 148.3 169 48.5
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 7.7e-34 148.3 168 48.2
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 7.7e-34 148.3 144 54.2
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 1.0e-33 147.9 141 55.3
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 2.9e-33 146.4 132 58.3
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 5.0e-33 145.6 150 54.0
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 8.5e-33 144.8 141 53.9
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 3.2e-32 142.9 169 45.0
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.2e-32 142.9 165 46.7
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 9.4e-32 141.4 137 53.3
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 2.7e-31 139.8 137 54.0
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 3.6e-31 139.4 137 54.0
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 4.7e-31 139.0 179 43.6
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 6.1e-31 138.7 132 55.3
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 8.0e-31 138.3 129 55.0
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 1.0e-30 137.9 170 45.9
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.4e-30 137.5 176 44.9
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 3.0e-30 136.3 128 52.3
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 6.8e-30 135.2 141 51.8
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 3.4e-29 132.9 174 44.3
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 1.3e-28 131.0 133 54.1
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 2.8e-28 129.8 125 52.8
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 3.7e-28 129.4 170 43.5
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 6.3e-28 128.6 123 54.5
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.8e-27 127.1 174 43.1
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 1.2e-26 124.4 165 41.8
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 1.2e-26 124.4 122 52.5
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 1.2e-26 124.4 135 51.9
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 4.5e-26 122.5 144 46.5
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 7.7e-26 121.7 132 47.7
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 6.6e-25 118.6 125 50.4
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 2.1e-23 113.6 168 41.1
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 6.1e-23 112.1 170 40.0
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 1.0e-22 111.3 90 58.9
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 7.5e-21 105.1 105 50.5
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 2.2e-20 103.6 141 42.6
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 3.7e-20 102.8 104 50.0
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 8.3e-20 101.7 104 51.0
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 1.4e-19 100.9 104 48.1
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 2.7e-18 96.7 123 43.1
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 3.5e-18 96.3 161 34.2
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 3.9e-17 92.8 166 33.7
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 1.4e-14 84.3 132 39.4
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.4e-14 84.3 132 39.4
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 2.9e-12 76.6 155 31.0
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 3.2e-11 73.2 160 30.0
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 4.1e-11 72.8 148 33.8
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 1.6e-10 70.9 155 30.3
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 4.6e-10 69.3 147 30.6
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 6.0e-10 68.9 156 30.8
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 6.0e-10 68.9 150 30.7
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 6.0e-10 68.9 132 31.8
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.5e-08 64.3 148 29.1
Prupe.3G032500 Prunus persica HOM05D003357 ORTHO05D003779 3.3e-08 63.2 157 30.6
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 7.3e-08 62.0 154 29.9
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 9.5e-08 61.6 150 32.7
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 9.5e-08 61.6 154 29.9
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 9.5e-08 61.6 159 29.6
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 9.5e-08 61.6 159 29.6
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.6e-07 60.8 159 28.3
ECA240G3987 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.7e-07 59.3 61 45.9
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 6.2e-07 58.9 168 28.6
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 8.0e-07 58.5 154 30.5
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.1e-06 58.2 150 30.7
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 1.4e-06 57.8 155 29.0
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.8e-06 57.4 131 28.2
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 3.1e-06 56.6 156 28.2
MD15G1282800 Malus domestica HOM05D003357 ORTHO05D003779 3.1e-06 56.6 71 43.7
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 5.2e-06 55.8 158 30.4
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 6.8e-06 55.5 78 39.7
SGA_v2.0_scaffold71G23911 Striga asiatica HOM05D003357 ORTHO05D003779 8.9e-06 55.1 159 29.6


User provided reference genes

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