Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14303 Sapria himalayana HOM05D003028 ORTHO05D003465 4.2e-74 281.2 134 100.0
Medtr4g099200 Medicago truncatula HOM05D003028 ORTHO05D003465 3.0e-11 72.4 65 53.8
CSS0008749 Camellia sinensis var. sinensis HOM05D003028 ORTHO05D003465 3.9e-11 72.0 65 52.3
Lj4g0020525 Lotus japonicus HOM05D003028 ORTHO05D003465 5.1e-11 71.6 65 53.8
Dinv25147 Davidia involucrata HOM05D003028 ORTHO05D003465 8.6e-11 70.9 65 55.4
Lalb_Chr16g0386391 Lupinus albus HOM05D003028 ORTHO05D003465 8.6e-11 70.9 68 50.0
Psat4g074480 Pisum sativum HOM05D003028 ORTHO05D003465 8.6e-11 70.9 65 49.2
RcHm_v2.0_Chr7g0206021 Rosa chinensis HOM05D003028 ORTHO05D003465 8.6e-11 70.9 58 60.3
arahy.Tifrunner.gnm1.ann1.8KVL3I Arachis hypogaea HOM05D003028 ORTHO05D003465 1.1e-10 70.5 65 52.3
arahy.Tifrunner.gnm1.ann1.E9F7LA Arachis hypogaea HOM05D003028 ORTHO05D003465 1.1e-10 70.5 65 52.3
QL08p008350 Quercus lobata HOM05D003028 ORTHO05D003465 1.1e-10 70.5 64 56.2
CiPaw.12G056100 Carya illinoinensis HOM05D003028 ORTHO05D003465 1.5e-10 70.1 58 56.9
Sp7g16530 Schrenkiella parvula HOM05D003028 ORTHO05D003465 1.5e-10 70.1 64 56.2
PGR031G1072 Punica granatum HOM05D003028 ORTHO05D003465 1.9e-10 69.7 58 62.1
AT4G17616 Arabidopsis thaliana HOM05D003028 ORTHO05D003465 2.5e-10 69.3 64 56.2
Rhsim03G0030600 Rhododendron simsii HOM05D003028 ORTHO05D003465 2.5e-10 69.3 113 39.8
RcHm_v2.0_Chr7g0206131 Rosa chinensis HOM05D003028 ORTHO05D003465 2.5e-10 69.3 58 58.6
Prupe.2G056400 Prunus persica HOM05D003028 ORTHO05D003465 3.3e-10 68.9 58 60.3
Ah.12g053910 Amaranthus hybridus HOM05D003028 ORTHO05D003465 4.3e-10 68.6 65 49.2
Potri.003G084400 Populus trichocarpa HOM05D003028 ORTHO05D003465 4.3e-10 68.6 65 52.3
VMungo1127G0894 Vigna mungo HOM05D003028 ORTHO05D003465 4.3e-10 68.6 93 41.9
Thhalv10024595m.g Eutrema salsugineum HOM05D003028 ORTHO05D003465 5.6e-10 68.2 64 54.7
FAN08G0752 Fragaria x ananassa HOM05D003028 ORTHO05D003465 5.6e-10 68.2 58 56.9
vmacro00390 Vaccinium macrocarpon HOM05D003028 ORTHO05D003465 5.6e-10 68.2 58 56.9
AUR62007185 Chenopodium quinoa HOM05D003028 ORTHO05D003465 7.3e-10 67.8 65 50.8
Dinv25144 Davidia involucrata HOM05D003028 ORTHO05D003465 7.3e-10 67.8 64 54.7
FAN04G1755 Fragaria x ananassa HOM05D003028 ORTHO05D003465 7.3e-10 67.8 58 56.9
FAN18G3943 Fragaria x ananassa HOM05D003028 ORTHO05D003465 7.3e-10 67.8 58 56.9
Glyma.17G149100 Glycine max HOM05D003028 ORTHO05D003465 9.6e-10 67.4 65 49.2
Sed0019599 Sechium edule HOM05D003028 ORTHO05D003465 9.6e-10 67.4 64 54.7
arahy.Tifrunner.gnm1.ann1.J5CKXS Arachis hypogaea HOM05D003028 ORTHO05D003465 1.6e-09 66.6 65 49.2
Ca_22023_v3 Cicer arietinum L. HOM05D003028 ORTHO05D003465 1.6e-09 66.6 65 47.7
TPR.G25764 Trifolium pratense HOM05D003028 ORTHO05D003465 1.6e-09 66.6 65 47.7
Duzib264G0873 Durio zibethinus HOM05D003028 ORTHO05D003465 2.1e-09 66.2 64 51.6
Thecc.01G159100 Theobroma cacao HOM05D003028 ORTHO05D003465 2.1e-09 66.2 65 49.2
BcaNung03453 Brassica carinata HOM05D003028 ORTHO05D003465 2.8e-09 65.9 64 53.1
Eucgr.D02137 Eucalyptus grandis HOM05D003028 ORTHO05D003465 2.8e-09 65.9 64 51.6
C07p48880 Brassica napus HOM05D003028 ORTHO05D003465 3.6e-09 65.5 64 53.1
BolC7t45396H Brassica oleracea HOM05D003028 ORTHO05D003465 3.6e-09 65.5 64 53.1
CANSAT11G2314 Cannabis sativa HOM05D003028 ORTHO05D003465 3.6e-09 65.5 60 53.3
CDE03G0495 Ceratophyllum demersum HOM05D003028 ORTHO05D003465 3.6e-09 65.5 59 49.2
Ciclev10011185m.g Citrus clementina HOM05D003028 ORTHO05D003465 3.6e-09 65.5 58 53.4
Gohir.D07G068100 Gossypium hirsutum HOM05D003028 ORTHO05D003465 3.6e-09 65.5 64 53.1
Rhsim03G0030000 Rhododendron simsii HOM05D003028 ORTHO05D003465 3.6e-09 65.5 58 51.7
EL10Ac5g12245 Beta vulgaris HOM05D003028 ORTHO05D003465 4.7e-09 65.1 65 47.7
FvH4_5g20640 Fragaria vesca HOM05D003028 ORTHO05D003465 4.7e-09 65.1 58 55.2
Hma1.2p1_0840F.1_g226740 Hydrangea macrophylla HOM05D003028 ORTHO05D003465 4.7e-09 65.1 59 52.5
Hma1.2p1_2748F.1_g327800 Hydrangea macrophylla HOM05D003028 ORTHO05D003465 4.7e-09 65.1 59 52.5
MD14G1090100 Malus domestica HOM05D003028 ORTHO05D003465 4.7e-09 65.1 58 55.2
Prupe.7G036400 Prunus persica HOM05D003028 ORTHO05D003465 4.7e-09 65.1 58 56.9
FAN13G3235 Fragaria x ananassa HOM05D003028 ORTHO05D003465 6.2e-09 64.7 58 55.2
CARHR224340 Cardamine hirsuta HOM05D003028 ORTHO05D003465 8.1e-09 64.3 64 53.1
Gorai.001G071600 Gossypium raimondii HOM05D003028 ORTHO05D003465 8.1e-09 64.3 63 52.4
Lj7P106T16 Lonicera japonica HOM05D003028 ORTHO05D003465 8.1e-09 64.3 65 47.7
Actinidia02201 Actinidia chinensis HOM05D003028 ORTHO05D003465 1.4e-08 63.5 64 48.4
ECA240G2633 Erigeron canadensis HOM05D003028 ORTHO05D003465 1.4e-08 63.5 65 49.2
Sabra03G0054900 Salix brachista HOM05D003028 ORTHO05D003465 1.4e-08 63.5 65 47.7
Atru.chr9.1176 Acer truncatum HOM05D003028 ORTHO05D003465 1.8e-08 63.2 64 50.0
AUR62018818 Chenopodium quinoa HOM05D003028 ORTHO05D003465 1.8e-08 63.2 65 46.2
Aa31LG6G370 Aethionema arabicum HOM05D003028 ORTHO05D003465 2.4e-08 62.8 62 53.2
BcaC06g33555 Brassica carinata HOM05D003028 ORTHO05D003465 3.1e-08 62.4 64 51.6
MSTRG.14033 Avicennia marina HOM05D003028 ORTHO05D003465 4.0e-08 62.0 65 47.7
A03p50560 Brassica napus HOM05D003028 ORTHO05D003465 4.0e-08 62.0 64 51.6
BraA03t14146Z Brassica rapa HOM05D003028 ORTHO05D003465 4.0e-08 62.0 64 51.6
COL.COLO4_33709 Corchorus olitorius HOM05D003028 ORTHO05D003465 4.0e-08 62.0 67 49.3
Gohir.A07G063400 Gossypium hirsutum HOM05D003028 ORTHO05D003465 4.0e-08 62.0 58 53.4
Zm00001eb432440 Zea mays HOM05D003028 ORTHO05D003465 6.8e-08 61.2 58 51.7
Cc08_g11180 Coffea canephora HOM05D003028 ORTHO05D003465 8.9e-08 60.8 64 45.3
TAR636G0001 Trochodendron aralioides HOM05D003028 ORTHO05D003465 8.9e-08 60.8 65 47.7
DCAR_010235 Daucus carota HOM05D003028 ORTHO05D003465 1.2e-07 60.5 65 44.6
Phvul.011G179900 Phaseolus vulgaris HOM05D003028 ORTHO05D003465 1.2e-07 60.5 65 44.6
Cpa.g.sc19.20 Carica papaya HOM05D003028 ORTHO05D003465 1.5e-07 60.1 65 46.2
Nitab4.5_0000433g0030 Nicotiana tabacum HOM05D003028 ORTHO05D003465 2.0e-07 59.7 70 44.3
Solyc04g072150.3 Solanum lycopersicum HOM05D003028 ORTHO05D003465 2.0e-07 59.7 70 45.7
PGSC0003DMG400031153 Solanum tuberosum HOM05D003028 ORTHO05D003465 2.0e-07 59.7 70 45.7
HanXRQChr03g0091541 Helianthus annuus HOM05D003028 ORTHO05D003465 2.6e-07 59.3 65 46.2
Nitab4.5_0001000g0120 Nicotiana tabacum HOM05D003028 ORTHO05D003465 2.6e-07 59.3 64 46.9
Sc12g0005140 Simmondsia chinensis HOM05D003028 ORTHO05D003465 2.6e-07 59.3 65 44.6
Migut.E01542 Erythranthe guttata HOM05D003028 ORTHO05D003465 4.4e-07 58.5 65 44.6
Manes.14G126400 Manihot esculenta HOM05D003028 ORTHO05D003465 4.4e-07 58.5 59 44.1
ClCG09G012540 Citrullus lanatus HOM05D003028 ORTHO05D003465 5.8e-07 58.2 68 44.1
Oeu028560.1 Olea europaea HOM05D003028 ORTHO05D003465 5.8e-07 58.2 59 50.8
Sopen04g028320 Solanum pennellii HOM05D003028 ORTHO05D003465 5.8e-07 58.2 70 44.3
CsaV3_3G049690 Cucumis sativus L. HOM05D003028 ORTHO05D003465 7.6e-07 57.8 58 50.0
Lsat_1_v5_gn_3_116821 Lactuca sativa HOM05D003028 ORTHO05D003465 7.6e-07 57.8 49 57.1
CAN.G564.17 Capsicum annuum HOM05D003028 ORTHO05D003465 9.9e-07 57.4 64 46.9
SalBow1G5264 Salvia bowleyana HOM05D003028 ORTHO05D003465 9.9e-07 57.4 59 49.2
TWI34G1562 Tripterygium wilfordii HOM05D003028 ORTHO05D003465 1.7e-06 56.6 65 44.6
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.2e-06 56.2 58 50.0
CSS0011247 Camellia sinensis var. sinensis HOM05D003028 ORTHO05D003465 3.8e-06 55.5 54 48.1
Peaxi162Scf00226g00318 Petunia axillaris HOM05D003028 ORTHO05D003465 4.9e-06 55.1 70 42.9
HPP92_014880 Vanilla planifolia HOM05D003028 ORTHO05D003465 6.4e-06 54.7 65 41.5


User provided reference genes

Program Settings