Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 4233.3 2225 100.0
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 1932.5 2326 48.8
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 1905.2 2317 48.2
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1835.1 2444 45.7
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 1805.8 2331 46.3
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 1796.6 2374 45.5
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 1771.9 2330 45.8
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 1767.7 2333 45.7
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 1758.4 2332 45.4
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 1746.5 2353 44.9
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 1743.0 2337 44.8
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1740.3 2326 45.3
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1731.8 2352 44.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 1729.9 2331 44.7
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1724.1 2352 44.6
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1712.2 2386 43.9
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1710.7 2325 44.7
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1709.5 2329 44.3
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 1692.9 2341 44.3
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 1686.4 2339 44.3
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 1680.2 2342 44.1
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 1679.8 2339 44.1
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1677.9 2324 44.2
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 1675.6 2369 44.1
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1672.1 2323 43.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1667.1 2326 43.9
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1665.2 2323 43.4
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1662.9 2349 43.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1650.6 2309 43.8
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1641.7 2321 43.7
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 1639.8 2426 42.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1605.1 2328 42.9
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1602.0 2325 43.0
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1598.9 2329 42.8
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1595.1 2323 41.8
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1593.9 2338 42.7
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1588.9 2343 41.9
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1584.7 2337 41.8
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1581.6 2358 42.6
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1580.1 2325 42.5
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1574.3 2356 42.3
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1569.3 2352 42.2
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1569.3 2327 41.6
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1565.4 2326 41.2
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1564.3 2330 42.3
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1559.7 2324 41.4
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1550.8 2326 41.7
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1545.8 2330 41.5
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1544.6 2105 44.4
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1540.0 2319 41.4
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1535.4 2328 41.0
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1533.5 2337 42.0
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1521.5 2330 40.5
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1521.5 2330 40.5
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1515.4 2323 41.2
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1513.0 2323 40.2
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1510.0 2322 40.0
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1506.9 2325 40.7
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1505.7 2398 40.5
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1505.3 2323 40.6
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1492.6 2329 40.2
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1483.8 2337 40.2
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1482.2 2316 40.7
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1481.8 2387 39.5
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1480.3 2391 40.1
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1479.5 2392 40.1
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1475.7 2303 42.0
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1470.7 2383 39.8
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1464.9 2393 40.0
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1463.4 2393 39.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1462.6 2397 39.6
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1461.4 2348 40.4
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1454.5 2391 39.5
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1449.9 2389 40.1
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1435.2 2370 39.5
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1390.6 2338 38.0
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1373.6 2386 38.3
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1365.5 2304 38.5
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1296.6 2071 39.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1275.4 2364 37.7
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1265.4 1961 41.3
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1256.1 2355 36.4
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1225.3 1917 40.2
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1216.8 2320 36.5
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1213.4 852 79.5
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1173.3 1998 39.5
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1168.7 2037 38.2
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1096.3 1994 37.6
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1092.8 1990 37.5
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1085.9 1989 36.8
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1083.2 1993 37.4
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1082.4 1849 38.2
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1081.6 1992 37.4
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1080.1 1491 43.9
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.0e-298 1030.4 1552 42.1
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 6.4e-284 982.2 1689 38.1
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 6.4e-284 982.2 2280 33.2
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 2.1e-266 924.1 1624 37.6
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 3.6e-247 860.1 1024 48.9
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.8e-246 857.8 1062 48.0
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 2.1e-242 844.3 1245 41.0
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 8.5e-220 769.2 2369 29.4
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.1e-214 750.4 1250 39.3
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 9.1e-198 696.0 2355 26.4
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 4.5e-189 667.2 775 50.1
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 9.8e-184 649.4 2232 27.2
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-182 645.2 847 45.6
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 5.5e-179 633.6 2296 27.3
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.3e-172 612.5 1252 34.7
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.5e-171 609.0 870 41.5
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-168 599.0 888 43.1
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.6e-162 577.8 1535 31.1
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.9e-161 573.2 885 42.1
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 6.8e-153 547.0 2425 25.2
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 7.1e-150 537.0 642 47.5
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 4.6e-141 507.7 628 45.2
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 4.8e-138 497.7 636 46.9
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.4e-134 485.3 845 40.0
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 5.3e-129 467.6 505 50.9
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 3.4e-128 464.9 563 48.3
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.5e-109 401.7 726 37.5
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.1e-109 401.0 397 53.7
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 7.2e-102 377.5 359 55.4
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 2.1e-101 375.9 361 53.7
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.6e-101 375.2 641 36.7
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.7e-93 349.0 747 33.9
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-92 347.1 426 46.0
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.4e-89 335.9 311 56.6
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-86 326.2 777 31.0
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.2e-86 325.5 635 35.7
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 2.2e-79 302.8 390 46.4
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.4e-73 282.7 290 55.2
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.7e-71 276.6 200 67.5
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.7e-63 250.0 254 53.9
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 2.5e-62 246.1 308 46.1
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 2.3e-60 239.6 148 89.2
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 3.7e-58 232.3 477 34.2
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 6.4e-58 231.5 242 51.7
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 8.3e-58 231.1 2519 21.4
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 3.5e-56 225.7 685 27.7
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.8e-53 216.1 521 34.2
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 6.2e-53 214.9 1051 24.9
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-51 210.3 384 39.1
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 2.9e-50 206.1 294 42.5
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 1.9e-46 193.4 128 75.0
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.6e-45 190.3 328 39.9
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 3.2e-41 176.0 114 73.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.3e-38 166.0 507 26.8
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 1.5e-35 157.1 220 44.5
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 1.5e-35 157.1 220 44.5
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 2.9e-34 152.9 450 29.6
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 6.0e-32 145.2 146 49.3
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.8e-32 144.8 355 34.9
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-30 140.6 93 75.3
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 3.1e-28 132.9 423 26.2
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 1.2e-24 120.9 252 38.5
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.7e-24 119.8 182 42.9
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.3e-23 117.5 182 42.3
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 7.6e-19 101.7 220 29.5
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 1.7e-18 100.5 60 88.3
SHI14049 Sapria himalayana HOM05D003586 ORTHO05D004036 1.4e-17 97.4 51 94.1
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.9e-17 97.1 126 42.9
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.7e-16 93.2 228 32.0
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 8.7e-15 88.2 222 27.9
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 6.2e-13 82.0 61 65.6
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 1.4e-12 80.9 963 21.2
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 1.5e-11 77.4 201 30.8
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 2.0e-11 77.0 141 34.8
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 5.8e-11 75.5 59 59.3
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 7.6e-11 75.1 59 59.3
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.2e-10 73.6 74 51.4
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 2.2e-10 73.6 90 43.3
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 8.4e-10 71.6 83 48.2
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 2.4e-09 70.1 211 24.2
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.3e-07 64.3 60 51.7
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.1e-06 61.2 85 43.5


User provided reference genes

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