Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 4.2e-225 784.3 368 100.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 2.1e-22 110.9 73 72.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 4.6e-22 109.8 53 96.2
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.9e-22 109.0 103 59.2
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 7.9e-22 109.0 92 62.0
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.0e-21 108.6 97 59.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.3e-21 108.2 53 94.3
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.8e-21 107.8 68 76.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.8e-21 107.8 67 76.1
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 3.0e-21 107.1 54 90.7
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 3.0e-21 107.1 67 74.6
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.0e-21 107.1 66 77.3
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.9e-21 106.7 57 86.0
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 3.9e-21 106.7 57 86.0
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 3.9e-21 106.7 53 90.6
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 3.9e-21 106.7 72 75.0
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 5.1e-21 106.3 66 75.8
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 5.1e-21 106.3 67 73.1
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 5.1e-21 106.3 53 92.5
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.7e-21 105.9 53 90.6
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 6.7e-21 105.9 52 94.2
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 6.7e-21 105.9 52 94.2
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 6.7e-21 105.9 53 90.6
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.7e-21 105.9 53 90.6
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 6.7e-21 105.9 53 90.6
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.7e-21 105.5 52 92.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 8.7e-21 105.5 51 96.1
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 8.7e-21 105.5 53 90.6
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.7e-21 105.5 51 96.1
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.7e-21 105.5 51 96.1
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 8.7e-21 105.5 71 67.6
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 8.7e-21 105.5 53 90.6
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 8.7e-21 105.5 67 74.6
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 8.7e-21 105.5 54 88.9
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.1e-20 105.1 53 90.6
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.1e-20 105.1 53 90.6
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.1e-20 105.1 53 90.6
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.1e-20 105.1 53 90.6
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.5e-20 104.8 67 71.6
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.5e-20 104.8 52 94.2
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.5e-20 104.8 67 71.6
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-20 104.8 53 90.6
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.5e-20 104.8 66 75.8
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.9e-20 104.4 53 90.6
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.9e-20 104.4 80 65.0
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.5e-20 104.0 52 92.3
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 2.5e-20 104.0 53 88.7
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 90.6
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 3.3e-20 103.6 53 88.7
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 4.3e-20 103.2 53 88.7
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 4.3e-20 103.2 53 88.7
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.3e-20 103.2 55 85.5
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.3e-20 103.2 55 85.5
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 4.3e-20 103.2 53 88.7
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 4.3e-20 103.2 53 88.7
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 4.3e-20 103.2 53 88.7
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.6e-20 102.8 55 83.6
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 5.6e-20 102.8 63 77.8
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 90.6
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 5.6e-20 102.8 68 70.6
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 5.6e-20 102.8 68 70.6
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 5.6e-20 102.8 54 87.0
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 5.6e-20 102.8 53 88.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 7.4e-20 102.4 53 88.7
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 7.4e-20 102.4 53 88.7
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.6e-20 102.1 53 88.7
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.6e-20 102.1 53 88.7
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 9.6e-20 102.1 53 88.7
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 9.6e-20 102.1 67 70.1
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 9.6e-20 102.1 51 92.2
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 86.8
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.3e-19 101.7 53 88.7
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.6e-19 101.3 53 86.8
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 1.6e-19 101.3 53 86.8
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.1e-19 100.9 52 92.3
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.1e-19 100.9 53 86.8
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.8e-19 100.5 52 88.5
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 2.8e-19 100.5 52 88.5
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.8e-19 100.5 53 86.8
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.8e-19 100.5 53 86.8
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.7e-19 100.1 66 71.2
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 4.8e-19 99.8 52 88.5
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 4.8e-19 99.8 52 88.5
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 1.1e-18 98.6 57 78.9
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.1e-18 98.6 60 76.7
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 2.4e-18 97.4 53 88.7
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.1e-18 97.1 66 68.2
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 6.9e-18 95.9 67 65.7
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 9.0e-18 95.5 66 68.2
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 4.5e-17 93.2 53 77.4
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 9.9e-17 92.0 45 93.3
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.2e-16 90.9 53 73.6
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 2.2e-16 90.9 49 83.7
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.8e-16 90.1 52 76.9
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 3.8e-16 90.1 53 75.5
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 8.4e-16 89.0 50 80.0
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-15 87.0 53 73.6
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 2.1e-14 84.3 52 76.9
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.5e-12 77.4 38 92.1
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 2.1e-11 74.3 47 76.6
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.8e-11 73.2 35 97.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 3.4e-09 67.0 139 35.3
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.6e-09 65.9 135 39.3
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-08 63.9 36 75.0
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 8.4e-08 62.4 54 46.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.4e-07 61.6 87 44.8
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.5e-07 60.8 34 85.3
GSVIVG01032628001 Vitis vinifera HOM05D065150 ORTHO05D050818 2.5e-07 60.8 51 62.7
SHI32081 Sapria himalayana HOM05D005377 ORTHO05D003034 5.5e-07 59.7 36 69.4
SHI14093 Sapria himalayana HOM05D005377 ORTHO05D003034 7.1e-07 59.3 36 69.4
SHI44937 Sapria himalayana HOM05D000219 ORTHO05D010276 9.3e-07 58.9 36 66.7
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.2e-06 58.5 28 89.3
SHI07035 Sapria himalayana HOM05D005377 ORTHO05D003034 2.7e-06 57.4 38 63.2
SHI11061 Sapria himalayana HOM05D065150 ORTHO05D050818 2.7e-06 57.4 44 68.2
SHI09524 Sapria himalayana HOM05D005377 ORTHO05D003034 3.5e-06 57.0 151 31.8
SHI18084 Sapria himalayana HOM05D002902 ORTHO05D008934 3.5e-06 57.0 41 70.7
SHI00601 Sapria himalayana HOM05D000023 ORTHO05D000014 6.1e-06 56.2 36 63.9
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.9e-06 55.8 84 44.0


User provided reference genes

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