Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 3.3e-83 311.6 151 100.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 3.5e-16 89.0 114 47.4
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 3.5e-16 89.0 115 47.8
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 4.5e-16 88.6 115 47.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 1.0e-15 87.4 115 47.0
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-15 87.4 115 47.0
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-15 87.4 115 47.0
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-15 87.4 115 47.0
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 2.9e-15 85.9 113 46.9
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 2.9e-15 85.9 115 47.0
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 2.9e-15 85.9 115 45.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 5.0e-15 85.1 112 46.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 6.5e-15 84.7 115 46.1
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 1.5e-14 83.6 115 46.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.5e-14 83.6 114 44.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.9e-14 83.2 115 46.1
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 3.2e-14 82.4 114 44.7
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 4.2e-14 82.0 115 42.6
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 4.2e-14 82.0 115 45.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 7.2e-14 81.3 114 42.1
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 9.4e-14 80.9 113 46.0
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 1.2e-13 80.5 115 42.6
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 1.2e-13 80.5 115 45.2
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 2.1e-13 79.7 116 44.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 2.7e-13 79.3 114 44.7
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 3.6e-13 79.0 115 41.7
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 4.7e-13 78.6 144 38.2
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 4.7e-13 78.6 116 45.7
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 6.1e-13 78.2 116 42.2
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 6.1e-13 78.2 115 44.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 8.0e-13 77.8 114 43.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.0e-12 77.4 115 42.6
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 1.0e-12 77.4 114 44.7
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 1.0e-12 77.4 115 42.6
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 1.0e-12 77.4 115 44.3
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.4e-12 77.0 116 42.2
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.4e-12 77.0 116 42.2
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 1.4e-12 77.0 115 44.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 1.8e-12 76.6 53 69.8
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 1.8e-12 76.6 113 45.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 5.2e-12 75.1 115 42.6
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 6.7e-12 74.7 116 44.0
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 8.8e-12 74.3 114 41.2
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 8.8e-12 74.3 115 41.7
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 1.5e-11 73.6 115 43.5
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 3.3e-11 72.4 115 39.1
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 3.3e-11 72.4 116 40.5
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 4.4e-11 72.0 116 42.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 5.7e-11 71.6 114 39.5
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 5.7e-11 71.6 116 38.8
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 1.7e-10 70.1 116 43.1
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 2.2e-10 69.7 118 40.7
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 2.8e-10 69.3 116 38.8
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 3.7e-10 68.9 116 39.7
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 6.3e-10 68.2 56 60.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 6.3e-10 68.2 56 60.7
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 6.3e-10 68.2 56 60.7
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 6.3e-10 68.2 56 60.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 8.2e-10 67.8 114 38.6
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.1e-09 67.4 114 38.6
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 1.4e-09 67.0 56 58.9
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 1.4e-09 67.0 115 41.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.4e-09 67.0 115 40.0
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 1.8e-09 66.6 56 58.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 2.4e-09 66.2 112 39.3
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 2.4e-09 66.2 114 38.6
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 2.4e-09 66.2 114 38.6
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 2.4e-09 66.2 114 40.4
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 4.1e-09 65.5 55 60.0
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 5.3e-09 65.1 54 59.3
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 9.1e-09 64.3 115 40.0
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.3e-07 60.5 54 55.6
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.2e-06 55.8 29 86.2
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 4.2e-06 55.5 115 36.5


User provided reference genes

Program Settings