Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07151 Sapria himalayana HOM05D001167 ORTHO05D001054 1.0e-69 266.5 130 100.0
Sabra03G0091400 Salix brachista HOM05D001167 ORTHO05D001054 3.6e-14 82.0 47 76.6
Atru.chr9.2174 Acer truncatum HOM05D001167 ORTHO05D001054 1.7e-11 73.2 79 51.9
Hund11464 Selenicereus undatus HOM05D001167 ORTHO05D001054 1.7e-11 73.2 38 84.2
Hund28522 Selenicereus undatus HOM05D001167 ORTHO05D001054 1.7e-11 73.2 38 84.2
Haze_08789 Corylus avellana HOM05D001167 ORTHO05D001054 2.2e-11 72.8 39 82.1
Lj8A221G67 Lonicera japonica HOM05D001167 ORTHO05D001054 2.2e-11 72.8 39 84.6
Manes.06G032400 Manihot esculenta HOM05D001167 ORTHO05D001054 2.2e-11 72.8 40 80.0
Cc08_g14830 Coffea canephora HOM05D001167 ORTHO05D001054 2.9e-11 72.4 41 78.0
Manes.01G059500 Manihot esculenta HOM05D001167 ORTHO05D001054 2.9e-11 72.4 39 82.1
Manes.02G020001 Manihot esculenta HOM05D001167 ORTHO05D001054 2.9e-11 72.4 39 82.1
BcaNung06084 Brassica carinata HOM05D001167 ORTHO05D001054 4.9e-11 71.6 40 77.5
CSS0021860 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 4.9e-11 71.6 43 72.1
Dinv37631 Davidia involucrata HOM05D001167 ORTHO05D001054 4.9e-11 71.6 39 82.1
Oeu007746.3 Olea europaea HOM05D001167 ORTHO05D001054 6.4e-11 71.2 39 82.1
SalBow1G2649 Salvia bowleyana HOM05D001167 ORTHO05D001054 6.4e-11 71.2 39 82.1
TWI81G0379 Tripterygium wilfordii HOM05D001167 ORTHO05D001054 6.4e-11 71.2 41 75.6
Actinidia01998 Actinidia chinensis HOM05D001167 ORTHO05D001054 8.4e-11 70.9 39 79.5
MSTRG.1862 Avicennia marina HOM05D001167 ORTHO05D001054 8.4e-11 70.9 39 82.1
Dinv38932 Davidia involucrata HOM05D001167 ORTHO05D001054 8.4e-11 70.9 39 79.5
Potri.003G128500 Populus trichocarpa HOM05D001167 ORTHO05D001054 1.1e-10 70.5 39 82.1
Cfa012220 Carpinus fangiana HOM05D001167 ORTHO05D001054 1.9e-10 69.7 39 76.9
Eucgr.D01835 Eucalyptus grandis HOM05D001167 ORTHO05D001054 1.9e-10 69.7 39 76.9
Hund14818 Selenicereus undatus HOM05D001167 ORTHO05D001054 1.9e-10 69.7 39 79.5
Hma1.2p1_0896F.1_g234090 Hydrangea macrophylla HOM05D001167 ORTHO05D001054 2.4e-10 69.3 39 76.9
TWI60G0506 Tripterygium wilfordii HOM05D001167 ORTHO05D001054 2.4e-10 69.3 41 73.2
A09p15350 Brassica napus HOM05D001167 ORTHO05D001054 3.2e-10 68.9 38 78.9
BolC9t54758H Brassica oleracea HOM05D001167 ORTHO05D001054 3.2e-10 68.9 38 78.9
BraA09t37179Z Brassica rapa HOM05D001167 ORTHO05D001054 3.2e-10 68.9 38 78.9
Cpa.g.sc74.6 Carica papaya HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
CiPaw.11G134200 Carya illinoinensis HOM05D001167 ORTHO05D001054 3.2e-10 68.9 38 78.9
Ciclev10019598m.g Citrus clementina HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
COL.COLO4_34477 Corchorus olitorius HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
Gohir.A12G230200 Gossypium hirsutum HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
Gohir.D12G231300 Gossypium hirsutum HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
Gorai.008G247500 Gossypium raimondii HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
Sc07g0009780 Simmondsia chinensis HOM05D001167 ORTHO05D001054 3.2e-10 68.9 39 76.9
CAN.G774.54 Capsicum annuum HOM05D001167 ORTHO05D001054 4.2e-10 68.6 39 76.9
CiPaw.12G092200 Carya illinoinensis HOM05D001167 ORTHO05D001054 4.2e-10 68.6 39 74.4
GSVIVG01019744001 Vitis vinifera HOM05D001167 ORTHO05D001054 4.2e-10 68.6 39 76.9
Sp2g00960 Schrenkiella parvula HOM05D001167 ORTHO05D001054 5.4e-10 68.2 38 78.9
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.4e-10 68.2 40 75.0
C09p18620 Brassica napus HOM05D001167 ORTHO05D001054 7.1e-10 67.8 38 76.3
CDE02G1308 Ceratophyllum demersum HOM05D001167 ORTHO05D001054 7.1e-10 67.8 38 78.9
CDE06G1349 Ceratophyllum demersum HOM05D001167 ORTHO05D001054 7.1e-10 67.8 38 78.9
ClCG01G002620 Citrullus lanatus HOM05D001167 ORTHO05D001054 7.1e-10 67.8 39 74.4
Duzib205G1672 Durio zibethinus HOM05D001167 ORTHO05D001054 7.1e-10 67.8 39 76.9
PGR031G3572 Punica granatum HOM05D001167 ORTHO05D001054 7.1e-10 67.8 39 74.4
CSS0010957 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 9.3e-10 67.4 39 74.4
CANSAT21G1910 Cannabis sativa HOM05D001167 ORTHO05D001054 9.3e-10 67.4 39 76.9
HanXRQChr06g0165881 Helianthus annuus HOM05D001167 ORTHO05D001054 9.3e-10 67.4 39 76.9
Prupe.5G101300 Prunus persica HOM05D001167 ORTHO05D001054 9.3e-10 67.4 38 78.9
Sed0019958 Sechium edule HOM05D001167 ORTHO05D001054 9.3e-10 67.4 39 74.4
AL2G11540 Arabidopsis lyrata HOM05D001167 ORTHO05D001054 1.2e-09 67.0 38 76.3
AT1G63690 Arabidopsis thaliana HOM05D001167 ORTHO05D001054 1.2e-09 67.0 38 76.3
EL10Ac6g14927 Beta vulgaris HOM05D001167 ORTHO05D001054 1.2e-09 67.0 39 79.5
Thhalv10023402m.g Eutrema salsugineum HOM05D001167 ORTHO05D001054 1.2e-09 67.0 38 78.9
Thecc.03G280100 Theobroma cacao HOM05D001167 ORTHO05D001054 1.2e-09 67.0 39 74.4
CSS0036365 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 1.6e-09 66.6 38 73.7
AUR62010691 Chenopodium quinoa HOM05D001167 ORTHO05D001054 1.6e-09 66.6 38 78.9
AUR62017191 Chenopodium quinoa HOM05D001167 ORTHO05D001054 1.6e-09 66.6 39 76.9
Peaxi162Scf00119g00949 Petunia axillaris HOM05D001167 ORTHO05D001054 1.6e-09 66.6 39 74.4
Solyc08g081180.3 Solanum lycopersicum HOM05D001167 ORTHO05D001054 1.6e-09 66.6 39 76.9
Sopen08g029480 Solanum pennellii HOM05D001167 ORTHO05D001054 1.6e-09 66.6 39 76.9
PGSC0003DMG401012338 Solanum tuberosum HOM05D001167 ORTHO05D001054 1.6e-09 66.6 39 76.9
Aa31LG2G900 Aethionema arabicum HOM05D001167 ORTHO05D001054 2.1e-09 66.2 38 76.3
AUR62003174 Chenopodium quinoa HOM05D001167 ORTHO05D001054 2.1e-09 66.2 39 76.9
AUR62007992 Chenopodium quinoa HOM05D001167 ORTHO05D001054 2.1e-09 66.2 39 76.9
DCAR_008389 Daucus carota HOM05D001167 ORTHO05D001054 2.1e-09 66.2 34 88.2
Nitab4.5_0010813g0030 Nicotiana tabacum HOM05D001167 ORTHO05D001054 2.1e-09 66.2 39 71.8
Potri.001G103100 Populus trichocarpa HOM05D001167 ORTHO05D001054 2.1e-09 66.2 39 71.8
THA.LOC104817964 Tarenaya hassleriana HOM05D001167 ORTHO05D001054 2.1e-09 66.2 38 76.3
MELO3C005684.2 Cucumis melo HOM05D001167 ORTHO05D001054 2.7e-09 65.9 39 71.8
CsaV3_5G002720 Cucumis sativus L. HOM05D001167 ORTHO05D001054 2.7e-09 65.9 39 71.8
Migut.E01088 Erythranthe guttata HOM05D001167 ORTHO05D001054 2.7e-09 65.9 38 78.9
QL12p032757 Quercus lobata HOM05D001167 ORTHO05D001054 2.7e-09 65.9 39 76.9
CARHR047650 Cardamine hirsuta HOM05D001167 ORTHO05D001054 3.5e-09 65.5 38 76.3
Lsat_1_v5_gn_3_6640 Lactuca sativa HOM05D001167 ORTHO05D001054 4.6e-09 65.1 39 76.9
MD06G1085300 Malus domestica HOM05D001167 ORTHO05D001054 4.6e-09 65.1 38 76.3
Carub.0002s0116 Capsella rubella HOM05D001167 ORTHO05D001054 6.0e-09 64.7 38 73.7
Ciclev10019661m.g Citrus clementina HOM05D001167 ORTHO05D001054 6.0e-09 64.7 38 73.7
ECA246G3226 Erigeron canadensis HOM05D001167 ORTHO05D001054 7.8e-09 64.3 39 74.4
Actinidia12700 Actinidia chinensis HOM05D001167 ORTHO05D001054 1.0e-08 63.9 43 67.4
Gohir.A03G016900 Gossypium hirsutum HOM05D001167 ORTHO05D001054 1.0e-08 63.9 39 71.8
Gohir.D03G151000 Gossypium hirsutum HOM05D001167 ORTHO05D001054 1.0e-08 63.9 39 71.8
Gorai.003G158200 Gossypium raimondii HOM05D001167 ORTHO05D001054 1.0e-08 63.9 39 71.8
RcHm_v2.0_Chr7g0197471 Rosa chinensis HOM05D001167 ORTHO05D001054 1.0e-08 63.9 38 73.7
TAR629G2058 Trochodendron aralioides HOM05D001167 ORTHO05D001054 1.0e-08 63.9 47 61.7
FvH4_5g02620 Fragaria vesca HOM05D001167 ORTHO05D001054 1.3e-08 63.5 38 73.7
FAN04G0553 Fragaria x ananassa HOM05D001167 ORTHO05D001054 1.3e-08 63.5 38 73.7
FAN08G2296 Fragaria x ananassa HOM05D001167 ORTHO05D001054 1.3e-08 63.5 38 73.7
FAN13G2985 Fragaria x ananassa HOM05D001167 ORTHO05D001054 1.3e-08 63.5 38 73.7
FAN18G3494 Fragaria x ananassa HOM05D001167 ORTHO05D001054 1.3e-08 63.5 38 73.7
Ca_19527_v3 Cicer arietinum L. HOM05D001167 ORTHO05D001054 2.3e-08 62.8 39 69.2
Duzib068G1385 Durio zibethinus HOM05D001167 ORTHO05D001054 2.3e-08 62.8 39 69.2
Glyma.11G023300 Glycine max HOM05D001167 ORTHO05D001054 2.3e-08 62.8 48 62.5
Lj2g0024056 Lotus japonicus HOM05D001167 ORTHO05D001054 2.3e-08 62.8 39 66.7
MD14G1106400 Malus domestica HOM05D001167 ORTHO05D001054 2.3e-08 62.8 38 73.7
arahy.Tifrunner.gnm1.ann1.LZ1547 Arachis hypogaea HOM05D001167 ORTHO05D001054 3.0e-08 62.4 39 69.2
TPR.G27716 Trifolium pratense HOM05D001167 ORTHO05D001054 3.0e-08 62.4 39 69.2
Cpa.g.sc11.10 Carica papaya HOM05D001167 ORTHO05D001054 5.1e-08 61.6 38 71.1
Cfa003913 Carpinus fangiana HOM05D001167 ORTHO05D001054 5.1e-08 61.6 46 60.9
Glyma.01G220400 Glycine max HOM05D001167 ORTHO05D001054 5.1e-08 61.6 39 71.8
Lalb_Chr05g0211801 Lupinus albus HOM05D001167 ORTHO05D001054 5.1e-08 61.6 39 69.2
Rhsim02G0231900 Rhododendron simsii HOM05D001167 ORTHO05D001054 6.6e-08 61.2 39 66.7
arahy.Tifrunner.gnm1.ann1.3G6XIY Arachis hypogaea HOM05D001167 ORTHO05D001054 8.7e-08 60.8 39 66.7
Os02g0823000 Oryza sativa ssp. japonica HOM05D001167 ORTHO05D001054 8.7e-08 60.8 46 56.5
Phvul.002G158100 Phaseolus vulgaris HOM05D001167 ORTHO05D001054 8.7e-08 60.8 39 69.2
Psat0s2545g0040 Pisum sativum HOM05D001167 ORTHO05D001054 8.7e-08 60.8 39 66.7
PGR031G1865 Punica granatum HOM05D001167 ORTHO05D001054 8.7e-08 60.8 46 56.5
VMungo1215G0524 Vigna mungo HOM05D001167 ORTHO05D001054 8.7e-08 60.8 39 69.2
Glyma.04G022620 Glycine max HOM05D001167 ORTHO05D001054 1.1e-07 60.5 39 71.8
VMungo1383G2100 Vigna mungo HOM05D001167 ORTHO05D001054 1.1e-07 60.5 48 60.4
Nitab4.5_0000386g0090 Nicotiana tabacum HOM05D001167 ORTHO05D001054 1.5e-07 60.1 41 63.4
Nitab4.5_0008206g0030 Nicotiana tabacum HOM05D001167 ORTHO05D001054 1.5e-07 60.1 41 63.4
Dinv32489 Davidia involucrata HOM05D001167 ORTHO05D001054 1.9e-07 59.7 39 69.2
Lalb_Chr04g0256971 Lupinus albus HOM05D001167 ORTHO05D001054 4.3e-07 58.5 40 67.5
HPP92_022579 Vanilla planifolia HOM05D001167 ORTHO05D001054 4.3e-07 58.5 46 58.7
Zm00001eb229060 Zea mays HOM05D001167 ORTHO05D001054 4.3e-07 58.5 39 66.7
Glyma.07G069900 Glycine max HOM05D001167 ORTHO05D001054 5.6e-07 58.2 39 66.7
Glyma.18G233600 Glycine max HOM05D001167 ORTHO05D001054 5.6e-07 58.2 38 68.4
Medtr6g463340 Medicago truncatula HOM05D001167 ORTHO05D001054 5.6e-07 58.2 39 66.7
HanXRQChr16g0522341 Helianthus annuus HOM05D001167 ORTHO05D001054 7.3e-07 57.8 36 72.2
CSS0041986 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 9.6e-07 57.4 38 68.4
Ca_23629_v3 Cicer arietinum L. HOM05D001167 ORTHO05D001054 9.6e-07 57.4 38 68.4
Medtr8g030680 Medicago truncatula HOM05D001167 ORTHO05D001054 9.6e-07 57.4 38 68.4
PSO478G4717 Papaver somniferum HOM05D001167 ORTHO05D001054 9.6e-07 57.4 39 69.2
PSO782G2786 Papaver somniferum HOM05D001167 ORTHO05D001054 9.6e-07 57.4 39 69.2
Cc02_g38090 Coffea canephora HOM05D001167 ORTHO05D001054 1.3e-06 57.0 39 64.1
vmacro11365 Vaccinium macrocarpon HOM05D001167 ORTHO05D001054 1.3e-06 57.0 39 61.5
Aqoxy7G00294 Aquilegia oxysepala HOM05D001167 ORTHO05D001054 1.6e-06 56.6 39 74.4
Haze_15518 Corylus avellana HOM05D001167 ORTHO05D001054 1.6e-06 56.6 46 54.3
Lj1g0023896 Lotus japonicus HOM05D001167 ORTHO05D001054 1.6e-06 56.6 39 66.7
CSS0027930 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 2.1e-06 56.2 39 64.1
Ca_07925_v3 Cicer arietinum L. HOM05D001167 ORTHO05D001054 2.1e-06 56.2 39 64.1
Lalb_Chr10g0096891 Lupinus albus HOM05D001167 ORTHO05D001054 2.1e-06 56.2 38 68.4
Rhsim01G0159800 Rhododendron simsii HOM05D001167 ORTHO05D001054 2.1e-06 56.2 38 68.4
TAR375G1007 Trochodendron aralioides HOM05D001167 ORTHO05D001054 2.1e-06 56.2 39 66.7
Zm00001eb190960 Zea mays HOM05D001167 ORTHO05D001054 2.1e-06 56.2 116 33.6
Lalb_Chr17g0339561 Lupinus albus HOM05D001167 ORTHO05D001054 2.8e-06 55.8 38 68.4
Nitab4.5_0000583g0160 Nicotiana tabacum HOM05D001167 ORTHO05D001054 2.8e-06 55.8 39 66.7
Nitab4.5_0009911g0020 Nicotiana tabacum HOM05D001167 ORTHO05D001054 2.8e-06 55.8 39 66.7
Phvul.010G099500 Phaseolus vulgaris HOM05D001167 ORTHO05D001054 2.8e-06 55.8 39 64.1
QL08p048321 Quercus lobata HOM05D001167 ORTHO05D001054 2.8e-06 55.8 47 57.4
VMungo0331G1965 Vigna mungo HOM05D001167 ORTHO05D001054 2.8e-06 55.8 39 64.1
Atru.chr5.503 Acer truncatum HOM05D001167 ORTHO05D001054 3.6e-06 55.5 39 61.5
CAN.G78.84 Capsicum annuum HOM05D001167 ORTHO05D001054 3.6e-06 55.5 39 66.7
Oeu036600.2 Olea europaea HOM05D001167 ORTHO05D001054 3.6e-06 55.5 38 63.2
GSVIVG01026938001 Vitis vinifera HOM05D001167 ORTHO05D001054 3.6e-06 55.5 39 64.1
arahy.Tifrunner.gnm1.ann1.2WSC6I Arachis hypogaea HOM05D001167 ORTHO05D001054 4.8e-06 55.1 39 64.1
arahy.Tifrunner.gnm1.ann1.F37QMR Arachis hypogaea HOM05D001167 ORTHO05D001054 4.8e-06 55.1 39 64.1
Dinv43821 Davidia involucrata HOM05D001167 ORTHO05D001054 4.8e-06 55.1 38 65.8
Eucgr.D02301 Eucalyptus grandis HOM05D001167 ORTHO05D001054 4.8e-06 55.1 34 70.6
Manes.01G256100 Manihot esculenta HOM05D001167 ORTHO05D001054 4.8e-06 55.1 39 61.5
Sabra02G0127400 Salix brachista HOM05D001167 ORTHO05D001054 4.8e-06 55.1 43 58.1
TWI14G1350 Tripterygium wilfordii HOM05D001167 ORTHO05D001054 4.8e-06 55.1 38 63.2
arahy.Tifrunner.gnm1.ann1.2SFV3A Arachis hypogaea HOM05D001167 ORTHO05D001054 6.2e-06 54.7 38 63.2
arahy.Tifrunner.gnm1.ann1.XSNT16 Arachis hypogaea HOM05D001167 ORTHO05D001054 6.2e-06 54.7 38 63.2
Glyma.03G008600 Glycine max HOM05D001167 ORTHO05D001054 6.2e-06 54.7 39 64.1
THA.LOC104817025 Tarenaya hassleriana HOM05D001167 ORTHO05D001054 6.2e-06 54.7 39 64.1
Thecc.01G358400 Theobroma cacao HOM05D001167 ORTHO05D001054 6.2e-06 54.7 38 68.4
Gohir.D08G152900 Gossypium hirsutum HOM05D001167 ORTHO05D001054 8.1e-06 54.3 69 46.4
Lsat_1_v5_gn_4_36001 Lactuca sativa HOM05D001167 ORTHO05D001054 8.1e-06 54.3 36 66.7
Nn1g01545 Nelumbo nucifera HOM05D001167 ORTHO05D001054 8.1e-06 54.3 39 66.7
Os06g0730900 Oryza sativa ssp. japonica HOM05D001167 ORTHO05D001054 8.1e-06 54.3 39 61.5
Sed0001380 Sechium edule HOM05D001167 ORTHO05D001054 8.1e-06 54.3 69 46.4
Solyc01g094680.4 Solanum lycopersicum HOM05D001167 ORTHO05D001054 8.1e-06 54.3 39 64.1
Sopen01g038490 Solanum pennellii HOM05D001167 ORTHO05D001054 8.1e-06 54.3 39 64.1


User provided reference genes

Program Settings