Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04225 Sapria himalayana HOM05D003290 ORTHO05D003866 7.3e-50 200.3 104 100.0
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.8e-35 152.5 88 88.6
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 3.0e-35 151.8 88 85.2
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 3.9e-35 151.4 88 87.5
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 5.1e-35 151.0 88 85.2
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 5.1e-35 151.0 88 85.2
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 5.1e-35 151.0 88 85.2
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 6.7e-35 150.6 88 85.2
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 6.7e-35 150.6 88 86.4
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 8.7e-35 150.2 88 84.1
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 8.7e-35 150.2 88 85.2
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 8.7e-35 150.2 88 85.2
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.1e-34 149.8 88 85.2
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 1.1e-34 149.8 88 86.4
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.5e-34 149.4 88 86.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 1.5e-34 149.4 88 84.1
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 1.9e-34 149.1 88 86.4
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.9e-34 149.1 88 86.4
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.9e-34 149.1 88 86.4
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.9e-34 149.1 88 84.1
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 2.5e-34 148.7 88 86.4
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 2.5e-34 148.7 88 85.2
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 4.3e-34 147.9 88 84.1
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 4.3e-34 147.9 88 83.0
Cpa.g.sc2.63 Carica papaya HOM05D003290 ORTHO05D003866 5.6e-34 147.5 88 84.1
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 5.6e-34 147.5 88 81.8
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 5.6e-34 147.5 88 81.8
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 5.6e-34 147.5 88 85.2
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 7.4e-34 147.1 88 83.0
Sc03g0005950 Simmondsia chinensis HOM05D003290 ORTHO05D003866 7.4e-34 147.1 88 84.1
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 9.6e-34 146.7 88 85.2
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.3e-33 146.4 88 84.1
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 1.3e-33 146.4 88 84.1
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 1.6e-33 146.0 88 83.0
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.1e-33 145.6 88 85.2
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 2.8e-33 145.2 88 83.0
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 3.7e-33 144.8 88 83.0
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 3.7e-33 144.8 88 84.1
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 3.7e-33 144.8 88 84.1
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 4.8e-33 144.4 88 80.7
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 6.2e-33 144.1 88 83.0
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 6.2e-33 144.1 88 83.0
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 6.2e-33 144.1 87 85.1
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 6.2e-33 144.1 88 81.8
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 8.1e-33 143.7 88 81.8
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 1.4e-32 142.9 88 80.7
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 1.4e-32 142.9 88 80.7
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 1.8e-32 142.5 88 81.8
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 1.8e-32 142.5 88 81.8
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 1.8e-32 142.5 88 81.8
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 1.8e-32 142.5 88 81.8
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 2.4e-32 142.1 88 79.5
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.4e-32 142.1 88 81.8
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.4e-32 142.1 88 81.8
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 2.4e-32 142.1 88 81.8
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 3.1e-32 141.7 88 81.8
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 3.1e-32 141.7 90 80.0
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 3.1e-32 141.7 88 79.5
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 4.0e-32 141.4 88 80.7
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 80.7
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 80.7
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 79.5
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 81.8
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 80.7
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 5.3e-32 141.0 88 80.7
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 6.9e-32 140.6 88 79.5
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 6.9e-32 140.6 88 78.4
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 9.0e-32 140.2 88 79.5
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 9.0e-32 140.2 88 78.4
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 9.0e-32 140.2 88 78.4
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 1.2e-31 139.8 88 81.8
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.2e-31 139.8 88 79.5
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.2e-31 139.8 88 79.5
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.5e-31 139.4 88 79.5
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 1.5e-31 139.4 88 77.3
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 2.6e-31 138.7 88 79.5
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.5e-31 137.9 88 77.3
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 5.8e-31 137.5 88 79.5
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 5.8e-31 137.5 88 77.3
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 7.6e-31 137.1 88 77.3
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 7.6e-31 137.1 88 77.3
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 7.6e-31 137.1 88 77.3
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 7.6e-31 137.1 88 77.3
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 7.6e-31 137.1 88 77.3
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.0e-30 136.7 88 77.3
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 1.0e-30 136.7 88 77.3
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 1.3e-30 136.3 88 77.3
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.3e-30 136.3 88 78.4
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 1.3e-30 136.3 88 78.4
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 1.7e-30 136.0 88 76.1
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 1.7e-30 136.0 88 76.1
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.7e-30 136.0 88 77.3
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.2e-30 135.6 88 76.1
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.2e-30 135.6 88 77.3
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.9e-30 135.2 88 76.1
CARHR015160 Cardamine hirsuta HOM05D003290 ORTHO05D003866 2.9e-30 135.2 88 73.9
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 2.9e-30 135.2 88 73.9
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 3.8e-30 134.8 88 76.1
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 4.9e-30 134.4 88 73.9
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 6.5e-30 134.0 88 71.6
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.1e-29 133.3 88 71.6
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 1.1e-29 133.3 88 71.6
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.1e-29 133.3 88 75.0
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.4e-29 132.9 88 73.9
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 4.2e-29 131.3 88 72.7
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 4.2e-29 131.3 88 72.7
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 5.5e-29 131.0 90 71.1
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 9.3e-29 130.2 88 70.5
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 9.3e-29 130.2 88 70.5
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 9.3e-29 130.2 88 70.5
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 9.3e-29 130.2 88 72.7
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.2e-28 129.8 88 73.9
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 1.2e-28 129.8 88 70.5
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.1e-28 129.0 90 70.0
Solyc04g018090.2 Solanum lycopersicum HOM05D003290 ORTHO05D003866 2.1e-28 129.0 88 70.5
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.7e-28 128.6 92 66.3
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 2.7e-28 128.6 88 70.5
Peaxi162Scf00130g01212 Petunia axillaris HOM05D003290 ORTHO05D003866 2.7e-28 128.6 88 71.6
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 4.6e-28 127.9 88 69.3
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 4.6e-28 127.9 88 69.3
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 7.9e-28 127.1 91 68.1
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 7.9e-28 127.1 88 69.3
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.8e-27 125.9 91 69.2
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 2.3e-27 125.6 88 71.6
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 5.1e-27 124.4 85 71.8
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 5.1e-27 124.4 88 67.0
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 2.5e-26 122.1 94 67.0
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 4.3e-26 121.3 91 67.0
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.3e-25 119.8 89 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.6e-25 119.4 88 70.5
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.6e-25 119.4 84 69.0
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.8e-25 118.6 115 55.7
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 4.8e-25 117.9 84 67.9
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 8.2e-25 117.1 91 64.8
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 1.4e-24 116.3 88 65.9
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 1.0e-22 110.2 89 69.7
FvH4_4g35890 Fragaria vesca HOM05D003290 ORTHO05D003866 7.9e-20 100.5 54 88.9
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.0e-19 100.1 57 84.2
MCO04G150 Micromonas commoda HOM05D003290 ORTHO05D003866 1.3e-19 99.8 86 59.3
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.3e-19 99.0 62 74.2
Medtr2g038400 Medicago truncatula HOM05D003290 ORTHO05D003866 3.9e-19 98.2 54 87.0
PRCOL_00005089 Prasinoderma coloniale HOM05D003290 ORTHO05D003866 9.7e-18 93.6 84 53.6
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 6.9e-16 87.4 57 71.9
FAN22G1869 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.4e-13 79.7 58 67.2
Haze_10797 Corylus avellana HOM05D003290 ORTHO05D003866 1.0e-11 73.6 79 53.2
COL.COLO4_38274 Corchorus olitorius HOM05D003290 ORTHO05D044336 2.0e-07 59.3 63 42.9
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 4.5e-07 58.2 95 34.7
Cre05.g234645 Chlamydomonas reinhardtii HOM05D003290 ORTHO05D003866 1.7e-06 56.2 68 38.2
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 6.5e-06 54.3 79 39.2


User provided reference genes

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