Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03885 Sapria himalayana HOM05D003330 ORTHO05D003805 5.6e-164 580.9 293 100.0
Hma1.2p1_0149F.1_g066530 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 2.0e-12 77.4 70 58.6
arahy.Tifrunner.gnm1.ann1.K4VXRT Arachis hypogaea HOM05D003330 ORTHO05D003805 7.7e-12 75.5 70 55.7
arahy.Tifrunner.gnm1.ann1.T9C3HB Arachis hypogaea HOM05D003330 ORTHO05D003805 7.7e-12 75.5 70 55.7
Dinv19152 Davidia involucrata HOM05D003330 ORTHO05D003805 7.7e-12 75.5 72 55.6
Cpa.g.sc8.124 Carica papaya HOM05D003330 ORTHO05D003805 1.3e-11 74.7 71 53.5
Lsat_1_v5_gn_5_177621 Lactuca sativa HOM05D003330 ORTHO05D003805 1.3e-11 74.7 70 54.3
TAR365G0843 Trochodendron aralioides HOM05D003330 ORTHO05D003805 1.3e-11 74.7 71 54.9
TAR636G1967 Trochodendron aralioides HOM05D003330 ORTHO05D003805 1.3e-11 74.7 85 47.1
Dinv28843 Davidia involucrata HOM05D003330 ORTHO05D003805 2.2e-11 73.9 72 54.2
MD05G1169300 Malus domestica HOM05D003330 ORTHO05D003805 3.8e-11 73.2 71 52.1
MD10G1157600 Malus domestica HOM05D003330 ORTHO05D003805 3.8e-11 73.2 71 52.1
Potri.002G247100 Populus trichocarpa HOM05D003330 ORTHO05D003805 3.8e-11 73.2 71 49.3
Hma1.2p1_0226F.1_g095240 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 5.0e-11 72.8 72 52.8
Rhsim13G0049900 Rhododendron simsii HOM05D003330 ORTHO05D003805 5.0e-11 72.8 74 56.8
TPR.G31568 Trifolium pratense HOM05D003330 ORTHO05D003805 5.0e-11 72.8 71 49.3
BcaB04g21319 Brassica carinata HOM05D003330 ORTHO05D003805 6.5e-11 72.4 74 51.4
Dinv14525 Davidia involucrata HOM05D003330 ORTHO05D003805 6.5e-11 72.4 72 52.8
Potri.014G195000 Populus trichocarpa HOM05D003330 ORTHO05D003805 6.5e-11 72.4 70 50.0
Thecc.01G216800 Theobroma cacao HOM05D003330 ORTHO05D003805 6.5e-11 72.4 71 52.1
CSS0043597 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 1.1e-10 71.6 74 52.7
Nn1g08206 Nelumbo nucifera HOM05D003330 ORTHO05D003805 1.1e-10 71.6 71 49.3
Sabra02G0188100 Salix brachista HOM05D003330 ORTHO05D003805 1.1e-10 71.6 71 49.3
vmacro14723 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 1.4e-10 71.2 70 52.9
CANSAT01G2062 Cannabis sativa HOM05D003330 ORTHO05D003805 1.9e-10 70.9 71 52.1
Cfa010402 Carpinus fangiana HOM05D003330 ORTHO05D003805 1.9e-10 70.9 71 52.1
COL.COLO4_16110 Corchorus olitorius HOM05D003330 ORTHO05D003805 1.9e-10 70.9 71 52.1
Actinidia09460 Actinidia chinensis HOM05D003330 ORTHO05D003805 2.5e-10 70.5 72 50.0
Lj3g0017252 Lotus japonicus HOM05D003330 ORTHO05D003805 2.5e-10 70.5 65 53.8
Actinidia30042 Actinidia chinensis HOM05D003330 ORTHO05D003805 3.2e-10 70.1 72 50.0
Haze_03351 Corylus avellana HOM05D003330 ORTHO05D003805 3.2e-10 70.1 70 51.4
Eucgr.H00758 Eucalyptus grandis HOM05D003330 ORTHO05D003805 3.2e-10 70.1 71 53.5
Psat4g204360 Pisum sativum HOM05D003330 ORTHO05D003805 3.2e-10 70.1 70 50.0
Rhsim01G0251100 Rhododendron simsii HOM05D003330 ORTHO05D003805 3.2e-10 70.1 70 52.9
FAN27G2838 Fragaria x ananassa HOM05D003330 ORTHO05D003805 5.5e-10 69.3 71 49.3
Lsat_1_v5_gn_9_17281 Lactuca sativa HOM05D003330 ORTHO05D003805 5.5e-10 69.3 72 45.8
Actinidia23391 Actinidia chinensis HOM05D003330 ORTHO05D003805 7.2e-10 68.9 72 50.0
Cc01_g16540 Coffea canephora HOM05D003330 ORTHO05D003805 7.2e-10 68.9 73 47.9
FvH4_2g18370 Fragaria vesca HOM05D003330 ORTHO05D003805 7.2e-10 68.9 71 49.3
FAN15G2534 Fragaria x ananassa HOM05D003330 ORTHO05D003805 7.2e-10 68.9 71 49.3
FAN24G2302 Fragaria x ananassa HOM05D003330 ORTHO05D003805 7.2e-10 68.9 71 49.3
HanXRQChr01g0015341 Helianthus annuus HOM05D003330 ORTHO05D003805 7.2e-10 68.9 71 53.5
PGR083G2466 Punica granatum HOM05D003330 ORTHO05D003805 7.2e-10 68.9 70 51.4
RcHm_v2.0_Chr6g0283751 Rosa chinensis HOM05D003330 ORTHO05D003805 7.2e-10 68.9 71 52.1
Thhalv10004230m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 1.2e-09 68.2 70 48.6
PSO063G6993 Papaver somniferum HOM05D003330 ORTHO05D003805 1.2e-09 68.2 71 50.7
Sed0021953 Sechium edule HOM05D003330 ORTHO05D003805 1.2e-09 68.2 50 60.0
Atru.chr6.1444 Acer truncatum HOM05D003330 ORTHO05D003805 1.6e-09 67.8 72 45.8
Ciclev10020030m.g Citrus clementina HOM05D003330 ORTHO05D003805 1.6e-09 67.8 71 46.5
Duzib138G0157 Durio zibethinus HOM05D003330 ORTHO05D003805 1.6e-09 67.8 71 49.3
Migut.N00638 Erythranthe guttata HOM05D003330 ORTHO05D003805 1.6e-09 67.8 72 48.6
Oeu023105.2 Olea europaea HOM05D003330 ORTHO05D003805 1.6e-09 67.8 72 47.2
CDE05G3099 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 2.7e-09 67.0 70 48.6
Ca_23216_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 2.7e-09 67.0 70 50.0
Duzib211G0662 Durio zibethinus HOM05D003330 ORTHO05D003805 2.7e-09 67.0 71 47.9
Nn1g07549 Nelumbo nucifera HOM05D003330 ORTHO05D003805 2.7e-09 67.0 71 47.9
VMungo0331G0963 Vigna mungo HOM05D003330 ORTHO05D003805 2.7e-09 67.0 64 54.7
CsaV3_1G041250 Cucumis sativus L. HOM05D003330 ORTHO05D003805 3.6e-09 66.6 61 54.1
CsaV3_7G026240 Cucumis sativus L. HOM05D003330 ORTHO05D003805 3.6e-09 66.6 61 54.1
Gohir.A11G140200 Gossypium hirsutum HOM05D003330 ORTHO05D003805 3.6e-09 66.6 65 50.8
Gohir.D07G205000 Gossypium hirsutum HOM05D003330 ORTHO05D003805 3.6e-09 66.6 70 50.0
Gorai.001G231000 Gossypium raimondii HOM05D003330 ORTHO05D003805 3.6e-09 66.6 70 50.0
Atru.chr1.3019 Acer truncatum HOM05D003330 ORTHO05D003805 4.7e-09 66.2 72 45.8
CiPaw.13G050400 Carya illinoinensis HOM05D003330 ORTHO05D003805 4.7e-09 66.2 71 49.3
ClCG09G008720 Citrullus lanatus HOM05D003330 ORTHO05D003805 4.7e-09 66.2 61 54.1
Aa31LG5G17840 Aethionema arabicum HOM05D003330 ORTHO05D003805 6.1e-09 65.9 71 46.5
Phvul.010G022900 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 6.1e-09 65.9 71 46.5
Sp3g06200 Schrenkiella parvula HOM05D003330 ORTHO05D003805 6.1e-09 65.9 71 47.9
Thhalv10020678m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 7.9e-09 65.5 59 54.2
Sed0013413 Sechium edule HOM05D003330 ORTHO05D003805 7.9e-09 65.5 60 53.3
THA.LOC104822486 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 7.9e-09 65.5 71 42.3
vmacro02791 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 7.9e-09 65.5 73 49.3
BNapus_Darmor_BZH_scaffold_109p00160 Brassica napus HOM05D003330 ORTHO05D003805 1.0e-08 65.1 71 49.3
BolC1t05562H Brassica oleracea HOM05D003330 ORTHO05D003805 1.0e-08 65.1 71 49.3
BraA01t04390Z Brassica rapa HOM05D003330 ORTHO05D003805 1.0e-08 65.1 71 49.3
ECA248G3375 Erigeron canadensis HOM05D003330 ORTHO05D003805 1.0e-08 65.1 73 47.9
PSO017G6109 Papaver somniferum HOM05D003330 ORTHO05D003805 1.0e-08 65.1 71 47.9
Hund18440 Selenicereus undatus HOM05D003330 ORTHO05D003805 1.0e-08 65.1 75 44.0
BcaC05g29742 Brassica carinata HOM05D003330 ORTHO05D003805 1.4e-08 64.7 59 52.5
MELO3C021071.2 Cucumis melo HOM05D003330 ORTHO05D003805 1.4e-08 64.7 61 52.5
Gohir.A07G198600 Gossypium hirsutum HOM05D003330 ORTHO05D003805 1.4e-08 64.7 70 48.6
Nitab4.5_0002671g0010 Nicotiana tabacum HOM05D003330 ORTHO05D003805 1.4e-08 64.7 70 44.3
BcaC03g17663 Brassica carinata HOM05D003330 ORTHO05D003805 1.8e-08 64.3 69 44.9
C02p56690 Brassica napus HOM05D003330 ORTHO05D003805 1.8e-08 64.3 69 44.9
BolC2t11730H Brassica oleracea HOM05D003330 ORTHO05D003805 1.8e-08 64.3 69 44.9
CARHR081920 Cardamine hirsuta HOM05D003330 ORTHO05D003805 1.8e-08 64.3 74 45.9
Lj2C1122T12 Lonicera japonica HOM05D003330 ORTHO05D003805 1.8e-08 64.3 70 45.7
Medtr8g012570 Medicago truncatula HOM05D003330 ORTHO05D003805 1.8e-08 64.3 70 47.1
Hund05586 Selenicereus undatus HOM05D003330 ORTHO05D003805 1.8e-08 64.3 71 45.1
AT3G07270 Arabidopsis thaliana HOM05D003330 ORTHO05D003805 2.3e-08 63.9 59 52.5
MSTRG.18828 Avicennia marina HOM05D003330 ORTHO05D003805 2.3e-08 63.9 72 47.2
Carub.0003s0680 Capsella rubella HOM05D003330 ORTHO05D003805 2.3e-08 63.9 59 52.5
QL09p049903 Quercus lobata HOM05D003330 ORTHO05D003805 2.3e-08 63.9 71 46.5
Sp2g18970 Schrenkiella parvula HOM05D003330 ORTHO05D003805 2.3e-08 63.9 70 48.6
AL3G18570 Arabidopsis lyrata HOM05D003330 ORTHO05D003805 3.0e-08 63.5 71 47.9
BcaC05g29852 Brassica carinata HOM05D003330 ORTHO05D003805 3.0e-08 63.5 49 57.1
A05p40970 Brassica napus HOM05D003330 ORTHO05D003805 3.0e-08 63.5 49 57.1
C05p60090 Brassica napus HOM05D003330 ORTHO05D003805 3.0e-08 63.5 49 57.1
BolC5t34662H Brassica oleracea HOM05D003330 ORTHO05D003805 3.0e-08 63.5 49 57.1
Manes.12G049200 Manihot esculenta HOM05D003330 ORTHO05D003805 3.0e-08 63.5 71 45.1
TWI75G0253 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 3.0e-08 63.5 71 47.9
A02p37600 Brassica napus HOM05D003330 ORTHO05D003805 3.9e-08 63.2 66 45.5
BraA02t08744Z Brassica rapa HOM05D003330 ORTHO05D003805 3.9e-08 63.2 66 45.5
CSS0011751 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 3.9e-08 63.2 71 49.3
CSS0049579 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 3.9e-08 63.2 71 49.3
THA.LOC104818979 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 3.9e-08 63.2 67 44.8
TWI36G0434 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 3.9e-08 63.2 71 46.5
Nitab4.5_0003020g0100 Nicotiana tabacum HOM05D003330 ORTHO05D003805 5.1e-08 62.8 70 42.9
PGSC0003DMG400020105 Solanum tuberosum HOM05D003330 ORTHO05D003805 5.1e-08 62.8 70 42.9
Lj1g0012576 Lotus japonicus HOM05D003330 ORTHO05D003805 6.7e-08 62.4 71 46.5
Lalb_Chr19g0125901 Lupinus albus HOM05D003330 ORTHO05D003805 6.7e-08 62.4 70 44.3
Oeu009708.1 Olea europaea HOM05D003330 ORTHO05D003805 6.7e-08 62.4 86 40.7
BcaB07g30035 Brassica carinata HOM05D003330 ORTHO05D003805 8.8e-08 62.0 69 46.4
ATR0561G197 Amborella trichopoda HOM05D003330 ORTHO05D003805 1.1e-07 61.6 77 44.2
Nn3g20069 Nelumbo nucifera HOM05D003330 ORTHO05D003805 1.1e-07 61.6 73 47.9
TPR.G29158 Trifolium pratense HOM05D003330 ORTHO05D003805 1.1e-07 61.6 73 47.9
Ca_07508_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 1.5e-07 61.2 72 45.8
GSVIVG01000333001 Vitis vinifera HOM05D003330 ORTHO05D003805 1.5e-07 61.2 84 40.5
Solyc06g083230.3 Solanum lycopersicum HOM05D003330 ORTHO05D003805 2.0e-07 60.8 70 41.4
Sopen06g034620 Solanum pennellii HOM05D003330 ORTHO05D003805 2.0e-07 60.8 70 41.4
arahy.Tifrunner.gnm1.ann1.HTR3J4 Arachis hypogaea HOM05D003330 ORTHO05D003805 2.6e-07 60.5 68 48.5
CAN.G874.15 Capsicum annuum HOM05D003330 ORTHO05D003805 3.3e-07 60.1 70 41.4
Sc17g0002010 Simmondsia chinensis HOM05D003330 ORTHO05D003805 3.3e-07 60.1 70 44.3
Medtr7g055700 Medicago truncatula HOM05D003330 ORTHO05D003805 4.4e-07 59.7 70 44.3
SGA_v2.0_scaffold77G25273 Striga asiatica HOM05D003330 ORTHO05D003805 4.4e-07 59.7 80 41.2
Glyma.08G347400 Glycine max HOM05D003330 ORTHO05D003805 7.4e-07 58.9 70 45.7
Glyma.18G158900 Glycine max HOM05D003330 ORTHO05D003805 7.4e-07 58.9 70 47.1
EL10Ac6g13981 Beta vulgaris HOM05D003330 ORTHO05D003805 9.7e-07 58.5 71 43.7
Medtr8g016030 Medicago truncatula HOM05D003330 ORTHO05D003805 9.7e-07 58.5 70 45.7
Ah.08g214760 Amaranthus hybridus HOM05D003330 ORTHO05D003805 1.3e-06 58.2 84 40.5
EL10Ac4g09084 Beta vulgaris HOM05D003330 ORTHO05D003805 1.3e-06 58.2 71 42.3
Aqoxy4G02436 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 1.7e-06 57.8 76 43.4
Glyma.16G089300 Glycine max HOM05D003330 ORTHO05D003805 1.7e-06 57.8 48 60.4
VMungo1383G0348 Vigna mungo HOM05D003330 ORTHO05D003805 1.7e-06 57.8 71 46.5
Lalb_Chr03g0041371 Lupinus albus HOM05D003330 ORTHO05D003805 2.2e-06 57.4 70 41.4
MBI07_g27660_MAGBIO Magnolia biondii HOM05D003330 ORTHO05D003805 2.2e-06 57.4 44 61.4
Nitab4.5_0000403g0090 Nicotiana tabacum HOM05D003330 ORTHO05D003805 2.2e-06 57.4 45 57.8
arahy.Tifrunner.gnm1.ann1.VPSC2F Arachis hypogaea HOM05D003330 ORTHO05D003805 2.8e-06 57.0 68 45.6
Psat3g149760 Pisum sativum HOM05D003330 ORTHO05D003805 2.8e-06 57.0 70 45.7
Aqoxy5G00019 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 3.7e-06 56.6 76 43.4
unitig_0.g1214 Utricularia gibba HOM05D003330 ORTHO05D003805 3.7e-06 56.6 72 44.4
AUR62016529 Chenopodium quinoa HOM05D003330 ORTHO05D003805 4.8e-06 56.2 84 38.1
Phvul.008G132600 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 4.8e-06 56.2 39 66.7
VMungo0331G0017 Vigna mungo HOM05D003330 ORTHO05D003805 4.8e-06 56.2 81 39.5
GSVIVG01019962001 Vitis vinifera HOM05D003330 ORTHO05D003805 4.8e-06 56.2 58 48.3
Ah.08g214460 Amaranthus hybridus HOM05D003330 ORTHO05D003805 6.3e-06 55.8 84 35.7
Manes.13G051100 Manihot esculenta HOM05D003330 ORTHO05D003805 6.3e-06 55.8 77 37.7
Psat0s4107g0040 Pisum sativum HOM05D003330 ORTHO05D003805 6.3e-06 55.8 49 53.1
SalBow6G2435 Salvia bowleyana HOM05D003330 ORTHO05D003805 8.2e-06 55.5 64 43.8


User provided reference genes

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