Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01959 Sapria himalayana HOM05D000604 ORTHO05D004856 1.1e-73 280.0 159 100.0
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 2.1e-27 126.3 81 71.6
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 1.7e-26 123.2 84 65.5
ATR0680G299 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.0e-26 122.5 82 70.7
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 5.1e-26 121.7 75 73.3
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 8.6e-26 120.9 75 73.3
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 1.5e-25 120.2 76 75.0
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 1.5e-25 120.2 82 68.3
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 1.5e-25 120.2 75 70.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.9e-25 119.8 75 72.0
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 3.3e-25 119.0 75 72.0
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 4.3e-25 118.6 75 72.0
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 5.6e-25 118.2 86 66.3
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 70.7
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 69.3
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 69.3
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 69.3
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 69.3
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 72.0
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 5.6e-25 118.2 75 70.7
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 7.3e-25 117.9 74 73.0
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 7.3e-25 117.9 75 72.0
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 7.3e-25 117.9 75 73.3
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 7.3e-25 117.9 75 69.3
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 7.3e-25 117.9 75 73.3
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 9.6e-25 117.5 75 72.0
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 9.6e-25 117.5 75 72.0
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 9.6e-25 117.5 75 70.7
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 1.2e-24 117.1 75 70.7
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.2e-24 117.1 76 68.4
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 1.6e-24 116.7 75 70.7
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 1.6e-24 116.7 74 74.3
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 2.1e-24 116.3 75 69.3
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 2.1e-24 116.3 75 69.3
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 2.1e-24 116.3 75 69.3
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 2.8e-24 115.9 79 67.1
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 2.8e-24 115.9 75 68.0
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 2.8e-24 115.9 75 68.0
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 4.7e-24 115.2 75 68.0
Psat2g006120 Pisum sativum HOM05D000604 ORTHO05D004856 1.4e-23 113.6 84 65.5
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 1.8e-23 113.2 76 68.4
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.8e-23 113.2 74 70.3
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.8e-23 113.2 74 70.3
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 2.4e-23 112.8 75 69.3
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 3.1e-23 112.5 80 63.8
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 4.0e-23 112.1 75 69.3
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 4.0e-23 112.1 75 65.3
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 4.0e-23 112.1 75 65.3
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 5.2e-23 111.7 75 68.0
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 5.2e-23 111.7 75 65.3
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 6.8e-23 111.3 75 70.7
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 8.9e-23 110.9 75 68.0
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 8.9e-23 110.9 75 68.0
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 1.2e-22 110.5 74 67.6
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 1.5e-22 110.2 74 66.2
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 2.6e-22 109.4 75 68.0
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 2.6e-22 109.4 75 65.3
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 4.4e-22 108.6 77 64.9
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 5.8e-22 108.2 75 66.7
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 5.8e-22 108.2 75 66.7
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 5.8e-22 108.2 75 66.7
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 5.8e-22 108.2 78 61.5
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 5.8e-22 108.2 75 66.7
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 7.6e-22 107.8 75 66.7
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 1.3e-21 107.1 75 61.3
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 2.9e-21 105.9 75 65.3
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 2.9e-21 105.9 75 65.3
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 4.9e-21 105.1 75 64.0
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 1.1e-20 104.0 75 58.7
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.4e-20 103.6 75 61.3
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 1.4e-20 103.6 75 65.3
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 2.4e-20 102.8 75 62.7
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 3.2e-20 102.4 77 61.0
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 3.2e-20 102.4 75 57.3
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 4.2e-20 102.1 75 64.0
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 5.4e-20 101.7 76 67.1
Glyma.09G265100 Glycine max HOM05D000604 ORTHO05D004856 1.2e-19 100.5 74 64.9
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 1.2e-19 100.5 76 65.8
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 2.1e-19 99.8 85 55.3
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 2.7e-19 99.4 79 60.8
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 2.7e-19 99.4 78 57.7
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 7.8e-19 97.8 77 58.4
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 7.8e-19 97.8 77 58.4
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 7.8e-19 97.8 77 58.4
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 7.8e-19 97.8 77 58.4
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 7.8e-19 97.8 77 58.4
Cre16.g685200 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004856 5.1e-18 95.1 83 53.0
TPR.G31111 Trifolium pratense HOM05D000604 ORTHO05D004856 5.1e-18 95.1 75 57.3
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 6.6e-18 94.7 75 61.3
AT5G05720 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 8.7e-18 94.4 74 62.2
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 3.3e-17 92.4 74 51.4
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 4.3e-17 92.0 75 56.0
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 1.1e-15 87.4 87 49.4
BraSC37t46166Z Brassica rapa HOM05D000604 ORTHO05D028239 4.0e-15 85.5 65 64.6
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 8.4e-13 77.8 52 65.4
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 7.9e-11 71.2 42 76.2
A10p08390 Brassica napus HOM05D000604 ORTHO05D028239 1.0e-10 70.9 67 52.2
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 2.3e-10 69.7 42 71.4
Medtr7g096430 Medicago truncatula HOM05D000604 ORTHO05D028239 3.0e-10 69.3 71 50.7
PRCOL_00005574 Prasinoderma coloniale HOM05D000604 ORTHO05D004856 3.0e-10 69.3 91 37.4
Hund13011 Selenicereus undatus HOM05D000604 ORTHO05D004856 3.9e-10 68.9 42 71.4
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 5.1e-10 68.6 42 64.3
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 1.1e-09 67.4 42 66.7
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 1.9e-09 66.6 41 70.7
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.5e-09 66.2 41 65.9
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 3.3e-09 65.9 42 69.0
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 4.3e-09 65.5 42 66.7
A10p08380 Brassica napus HOM05D000604 ORTHO05D028239 5.6e-09 65.1 40 75.0
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 5.6e-09 65.1 42 61.9
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 7.3e-09 64.7 42 61.9
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 7.3e-09 64.7 42 61.9
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 9.6e-09 64.3 42 64.3
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 1.3e-08 63.9 42 66.7
MD05G1258800 Malus domestica HOM05D000604 ORTHO05D004856 1.1e-07 60.8 42 64.3
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 1.1e-07 60.8 41 56.1
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 3.1e-07 59.3 36 75.0
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 4.0e-07 58.9 45 55.6
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 4.0e-07 58.9 39 61.5
Migut.O00377 Erythranthe guttata HOM05D000604 ORTHO05D004856 5.3e-07 58.5 47 61.7
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 2.0e-06 56.6 77 36.4
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 2.0e-06 56.6 38 57.9
Pp3c11_7560 Physcomitrium patens HOM05D004650 ORTHO05D005715 2.0e-06 56.6 77 36.4
CANSAT11G1974 Cannabis sativa HOM05D004650 ORTHO05D005715 4.5e-06 55.5 77 39.0
CDE01G0417 Ceratophyllum demersum HOM05D000428 ORTHO05D000582 4.5e-06 55.5 77 32.5
Hma1.2p1_1578F.1_g291840 Hydrangea macrophylla HOM05D000428 ORTHO05D000582 4.5e-06 55.5 68 42.6
Manes.04G135800 Manihot esculenta HOM05D000428 ORTHO05D000582 4.5e-06 55.5 71 36.6
CSS0044217 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D000582 5.8e-06 55.1 71 38.0
CSS0046140 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D000582 5.8e-06 55.1 71 38.0
Nn8g39004 Nelumbo nucifera HOM05D000428 ORTHO05D000582 5.8e-06 55.1 74 33.8
Sabra16G0084300 Salix brachista HOM05D001873 ORTHO05D001976 5.8e-06 55.1 74 35.1
Sabra16G0084900 Salix brachista HOM05D001873 ORTHO05D001976 5.8e-06 55.1 74 35.1
Hund11230 Selenicereus undatus HOM05D000142 ORTHO05D003173 5.8e-06 55.1 79 38.0
TPR.G23542 Trifolium pratense HOM05D004650 ORTHO05D005715 5.8e-06 55.1 76 32.9
MD09G1199800 Malus domestica HOM05D000428 ORTHO05D000582 7.6e-06 54.7 71 36.6
SMO203G0028 Selaginella moellendorffii HOM05D004650 ORTHO05D005715 7.6e-06 54.7 77 36.4
Sc03g0007410 Simmondsia chinensis HOM05D000285 ORTHO05D000241 7.6e-06 54.7 83 39.8
Atru.chr1.3601 Acer truncatum HOM05D000428 ORTHO05D000582 9.9e-06 54.3 62 45.2
CSS0028303 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D015400 9.9e-06 54.3 69 39.1
Cre13.g573650 Chlamydomonas reinhardtii HOM05D001283 ORTHO05D001109 9.9e-06 54.3 82 36.6
Prupe.3G056300 Prunus persica HOM05D000428 ORTHO05D000582 9.9e-06 54.3 88 30.7


User provided reference genes

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