Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01422 Sapria himalayana HOM05D002324 ORTHO05D002380 3.6e-58 228.0 113 100.0
Peaxi162Scf00237g02221 Petunia axillaris HOM05D002324 ORTHO05D002380 5.2e-09 64.7 50 66.0
Nitab4.5_0006824g0030 Nicotiana tabacum HOM05D002324 ORTHO05D002380 8.9e-09 63.9 56 58.9
Nitab4.5_0000241g0200 Nicotiana tabacum HOM05D002324 ORTHO05D002380 2.6e-08 62.4 49 63.3
Aa31LG6G15160 Aethionema arabicum HOM05D002324 ORTHO05D002380 3.4e-08 62.0 47 63.8
Oeu002160.1 Olea europaea HOM05D002324 ORTHO05D002380 3.4e-08 62.0 49 63.3
Sopen11g005020 Solanum pennellii HOM05D002324 ORTHO05D002380 3.4e-08 62.0 45 68.9
Dinv08860 Davidia involucrata HOM05D002324 ORTHO05D002380 4.4e-08 61.6 39 71.8
vmacro12984 Vaccinium macrocarpon HOM05D002324 ORTHO05D002380 5.8e-08 61.2 39 71.8
Lj2A540G42 Lonicera japonica HOM05D002324 ORTHO05D002380 7.5e-08 60.8 64 51.6
arahy.Tifrunner.gnm1.ann1.D9ZPCT Arachis hypogaea HOM05D002324 ORTHO05D002380 9.9e-08 60.5 54 59.3
AUR62027206 Chenopodium quinoa HOM05D002324 ORTHO05D002380 9.9e-08 60.5 47 61.7
SGA_v2.0_scaffold195G40806 Striga asiatica HOM05D002324 ORTHO05D002380 9.9e-08 60.5 51 58.8
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.3e-07 60.1 48 60.4
Cc07_g14630 Coffea canephora HOM05D002324 ORTHO05D002380 1.3e-07 60.1 85 41.2
unitig_899.g14556 Utricularia gibba HOM05D002324 ORTHO05D002380 1.3e-07 60.1 48 58.3
arahy.Tifrunner.gnm1.ann1.ER7UN0 Arachis hypogaea HOM05D002324 ORTHO05D002380 1.7e-07 59.7 36 77.8
DCAR_003469 Daucus carota HOM05D002324 ORTHO05D002380 1.7e-07 59.7 37 73.0
Sabra07G0080100 Salix brachista HOM05D002324 ORTHO05D002380 1.7e-07 59.7 37 70.3
AUR62003262 Chenopodium quinoa HOM05D002324 ORTHO05D002380 2.2e-07 59.3 47 59.6
COL.COLO4_27293 Corchorus olitorius HOM05D002324 ORTHO05D002380 2.2e-07 59.3 36 69.4
Migut.H02333 Erythranthe guttata HOM05D002324 ORTHO05D002380 2.2e-07 59.3 45 62.2
MSTRG.2584 Avicennia marina HOM05D002324 ORTHO05D002380 2.9e-07 58.9 45 64.4
Cpa.g.sc55.76 Carica papaya HOM05D002324 ORTHO05D002380 2.9e-07 58.9 47 61.7
QL06p048168 Quercus lobata HOM05D002324 ORTHO05D002380 2.9e-07 58.9 49 61.2
Cfa002602 Carpinus fangiana HOM05D002324 ORTHO05D002380 3.7e-07 58.5 35 77.1
Duzib147G0146 Durio zibethinus HOM05D002324 ORTHO05D002380 3.7e-07 58.5 32 81.2
Gohir.D11G219000 Gossypium hirsutum HOM05D002324 ORTHO05D002380 3.7e-07 58.5 32 81.2
Solyc11g010240.3 Solanum lycopersicum HOM05D002324 ORTHO05D002380 3.7e-07 58.5 45 66.7
Haze_24853 Corylus avellana HOM05D002324 ORTHO05D002380 4.9e-07 58.2 33 78.8
Dinv13231 Davidia involucrata HOM05D002324 ORTHO05D002380 4.9e-07 58.2 35 74.3
Gohir.A12G083600 Gossypium hirsutum HOM05D002324 ORTHO05D002380 4.9e-07 58.2 32 78.1
Ah.03g141980 Amaranthus hybridus HOM05D002324 ORTHO05D002380 6.4e-07 57.8 47 57.4
EL10As13g24051 Beta vulgaris HOM05D002324 ORTHO05D002380 6.4e-07 57.8 47 59.6
CiPaw.04G103500 Carya illinoinensis HOM05D002324 ORTHO05D002380 6.4e-07 57.8 45 62.2
CiPaw.03G145500 Carya illinoinensis HOM05D002324 ORTHO05D002380 8.3e-07 57.4 32 81.2
Glyma.05G175900 Glycine max HOM05D002324 ORTHO05D002380 8.3e-07 57.4 45 62.2
PSO782G1184 Papaver somniferum HOM05D002324 ORTHO05D002380 8.3e-07 57.4 58 50.0
PGSC0003DMG400016150 Solanum tuberosum HOM05D002324 ORTHO05D002380 8.3e-07 57.4 45 64.4
BolC1t00108H Brassica oleracea HOM05D002324 ORTHO05D002380 1.1e-06 57.0 36 72.2
BraA01t00096Z Brassica rapa HOM05D002324 ORTHO05D002380 1.1e-06 57.0 36 72.2
Ca_17761_v3 Cicer arietinum L. HOM05D002324 ORTHO05D002380 1.1e-06 57.0 32 81.2
FAN19G1185 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.1e-06 57.0 39 66.7
Gohir.A11G205450 Gossypium hirsutum HOM05D002324 ORTHO05D002380 1.1e-06 57.0 31 80.6
Medtr8g089935 Medicago truncatula HOM05D002324 ORTHO05D002380 1.1e-06 57.0 32 81.2
Psat7g056480 Pisum sativum HOM05D002324 ORTHO05D002380 1.1e-06 57.0 32 81.2
Thecc.01G095800 Theobroma cacao HOM05D002324 ORTHO05D002380 1.1e-06 57.0 31 80.6
Gohir.D12G082400 Gossypium hirsutum HOM05D002324 ORTHO05D002380 1.4e-06 56.6 31 77.4
Gorai.008G090600 Gossypium raimondii HOM05D002324 ORTHO05D002380 1.4e-06 56.6 31 77.4
PSO541G0684 Papaver somniferum HOM05D002324 ORTHO05D002380 1.4e-06 56.6 33 72.7
PSO675G5704 Papaver somniferum HOM05D002324 ORTHO05D002380 1.4e-06 56.6 33 75.8
CARHR246600 Cardamine hirsuta HOM05D002324 ORTHO05D002380 1.9e-06 56.2 33 78.8
FAN26G0626 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.9e-06 56.2 36 72.2
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.9e-06 56.2 33 75.8
PSO063G4705 Papaver somniferum HOM05D002324 ORTHO05D002380 1.9e-06 56.2 31 77.4
Phvul.002G261000 Phaseolus vulgaris HOM05D002324 ORTHO05D002380 1.9e-06 56.2 45 60.0
Potri.007G096800 Populus trichocarpa HOM05D002324 ORTHO05D002380 1.9e-06 56.2 31 80.6
TWI74G0703 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 1.9e-06 56.2 60 46.7
VMungo0251G0900 Vigna mungo HOM05D002324 ORTHO05D002380 1.9e-06 56.2 45 60.0
CANSAT01G1194 Cannabis sativa HOM05D002324 ORTHO05D002380 2.4e-06 55.8 31 80.6
CAN.G905.14 Capsicum annuum HOM05D002324 ORTHO05D002380 2.4e-06 55.8 54 53.7
Duzib187G0684 Durio zibethinus HOM05D002324 ORTHO05D002380 2.4e-06 55.8 31 77.4
Lalb_Chr07g0185311 Lupinus albus HOM05D002324 ORTHO05D002380 2.4e-06 55.8 33 72.7
Potri.005G072200 Populus trichocarpa HOM05D002324 ORTHO05D002380 2.4e-06 55.8 31 80.6
Prupe.6G192800 Prunus persica HOM05D002324 ORTHO05D002380 2.4e-06 55.8 32 78.1
Sabra05G0059100 Salix brachista HOM05D002324 ORTHO05D002380 2.4e-06 55.8 33 78.8
THA.LOC104824891 Tarenaya hassleriana HOM05D002324 ORTHO05D002380 2.4e-06 55.8 32 75.0
FAN23G0474 Fragaria x ananassa HOM05D002324 ORTHO05D002380 3.2e-06 55.5 32 75.0
FAN28G1243 Fragaria x ananassa HOM05D002324 ORTHO05D002380 3.2e-06 55.5 32 75.0
Lalb_Chr12g0203971 Lupinus albus HOM05D002324 ORTHO05D002380 3.2e-06 55.5 31 80.6
Nn1g05453 Nelumbo nucifera HOM05D002324 ORTHO05D002380 3.2e-06 55.5 33 75.8
TWI53G1112 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 3.2e-06 55.5 45 57.8
Actinidia19993 Actinidia chinensis HOM05D002324 ORTHO05D002380 4.1e-06 55.1 31 77.4
Glyma.08G133400 Glycine max HOM05D002324 ORTHO05D002380 4.1e-06 55.1 45 60.0
Gorai.007G234900 Gossypium raimondii HOM05D002324 ORTHO05D002380 4.1e-06 55.1 31 77.4
AL7G12400 Arabidopsis lyrata HOM05D002324 ORTHO05D002380 5.4e-06 54.7 32 78.1
AT4G40050 Arabidopsis thaliana HOM05D002324 ORTHO05D002380 5.4e-06 54.7 32 78.1
BcaNung00936 Brassica carinata HOM05D002324 ORTHO05D002380 5.4e-06 54.7 32 78.1
CsaV3_4G004670 Cucumis sativus L. HOM05D002324 ORTHO05D002380 5.4e-06 54.7 36 63.9
Lj4g0007489 Lotus japonicus HOM05D002324 ORTHO05D002380 5.4e-06 54.7 32 78.1
Sp7g35800 Schrenkiella parvula HOM05D002324 ORTHO05D002380 5.4e-06 54.7 32 78.1
TAR628G1475 Trochodendron aralioides HOM05D002324 ORTHO05D002380 5.4e-06 54.7 31 77.4
Atru.chr3.1351 Acer truncatum HOM05D002324 ORTHO05D002380 7.1e-06 54.3 45 57.8
A01p00980 Brassica napus HOM05D002324 ORTHO05D002380 7.1e-06 54.3 32 75.0
C01p01100 Brassica napus HOM05D002324 ORTHO05D002380 7.1e-06 54.3 32 75.0
Ciclev10025207m.g Citrus clementina HOM05D002324 ORTHO05D002380 7.1e-06 54.3 28 78.6
Nn5g30005 Nelumbo nucifera HOM05D002324 ORTHO05D002380 7.1e-06 54.3 32 75.0
Aqoxy6G00718 Aquilegia oxysepala HOM05D002324 ORTHO05D002380 9.2e-06 53.9 31 77.4
FvH4_1g20260 Fragaria vesca HOM05D002324 ORTHO05D002380 9.2e-06 53.9 31 74.2
Oeu012396.2 Olea europaea HOM05D002324 ORTHO05D002380 9.2e-06 53.9 66 45.5
RcHm_v2.0_Chr2g0112401 Rosa chinensis HOM05D002324 ORTHO05D002380 9.2e-06 53.9 31 74.2


User provided reference genes

Program Settings