Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.6e-55 219.2 110 100.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 3.5e-18 95.1 49 95.9
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.0e-17 92.0 48 93.8
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.0e-17 92.0 48 93.8
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 6.6e-17 90.9 49 91.8
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 8.7e-17 90.5 49 89.8
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 8.7e-17 90.5 49 91.8
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 1.6e-15 86.3 79 57.0
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.6e-13 79.0 49 75.5
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 2.6e-13 79.0 49 75.5
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.4e-13 78.6 49 75.5
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.4e-13 78.6 47 78.7
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.4e-13 78.6 49 75.5
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 4.4e-13 78.2 48 75.0
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 2.9e-12 75.5 49 73.5
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 2.9e-12 75.5 49 73.5
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.8e-12 75.1 49 73.5
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.8e-12 75.1 49 73.5
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 3.8e-12 75.1 49 73.5
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 3.8e-12 75.1 49 73.5
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 5.1e-09 64.7 49 65.3
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-08 63.5 49 63.3
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-08 63.5 49 63.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.5e-08 63.2 49 67.3
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 2.5e-08 62.4 50 64.0
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 2.5e-08 62.4 50 64.0
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.3e-08 62.0 49 63.3
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 5.6e-08 61.2 49 63.3
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.6e-08 61.2 50 62.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 7.3e-08 60.8 49 61.2
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 7.3e-08 60.8 49 61.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 7.3e-08 60.8 49 61.2
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 7.3e-08 60.8 49 61.2
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 9.6e-08 60.5 49 61.2
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 1.3e-07 60.1 49 61.2
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.3e-07 60.1 49 63.3
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.3e-07 60.1 49 61.2
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.6e-07 59.7 49 61.2
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.6e-07 59.7 49 61.2
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.6e-07 59.7 49 61.2
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.6e-07 59.7 49 61.2
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 1.6e-07 59.7 46 65.2
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 2.1e-07 59.3 49 63.3
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 2.1e-07 59.3 49 59.2
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.8e-07 58.9 51 64.7
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.8e-07 58.9 51 64.7
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 2.8e-07 58.9 49 61.2
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 3.6e-07 58.5 49 59.2
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 3.6e-07 58.5 50 66.0
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 59.2
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 59.2
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 59.2
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 59.2
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 61.2
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 61.2
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 4.8e-07 58.2 46 65.2
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 4.8e-07 58.2 49 61.2
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 6.2e-07 57.8 49 59.2
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 6.2e-07 57.8 49 61.2
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 8.1e-07 57.4 46 63.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 8.1e-07 57.4 46 63.0
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 8.1e-07 57.4 49 57.1
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 8.1e-07 57.4 47 61.7
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.1e-06 57.0 50 64.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-06 57.0 49 59.2
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-06 57.0 49 59.2
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 1.4e-06 56.6 49 59.2
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.4e-06 56.6 49 59.2
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.8e-06 56.2 50 64.0
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-06 56.2 49 59.2
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 2.4e-06 55.8 47 57.4
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.4e-06 55.8 49 57.1
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 3.1e-06 55.5 48 56.2
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 4.0e-06 55.1 47 59.6
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 5.3e-06 54.7 46 58.7
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 9.0e-06 53.9 46 58.7
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 9.0e-06 53.9 46 60.9


User provided reference genes

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