Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 0.0e+00 1293.1 664 100.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.6e-307 1058.9 667 82.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 3.3e-297 1024.6 666 78.4
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.0e-290 1001.5 664 78.2
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.8e-280 968.4 658 74.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 8.3e-280 966.8 658 74.3
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 3.4e-273 944.9 660 72.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.4e-273 944.5 658 73.1
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.3e-272 943.0 661 71.9
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 8.3e-272 940.3 658 72.2
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.8e-271 939.1 661 72.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.8e-271 939.1 661 71.7
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.6e-270 936.0 663 71.6
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.3e-269 932.2 659 72.2
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.5e-268 928.7 655 72.4
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.4e-266 922.9 656 71.3
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.7e-265 917.5 659 71.2
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.7e-265 917.5 658 72.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 7.5e-265 917.1 659 71.3
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.4e-263 912.9 659 70.7
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 9.2e-263 910.2 658 71.7
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.7e-262 908.7 653 70.3
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.5e-260 902.9 647 71.4
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.3e-260 901.7 662 71.0
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 5.6e-260 901.0 666 69.4
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.1e-259 899.0 658 70.5
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.6e-259 898.3 666 68.8
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.8e-258 896.0 663 69.1
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 2.3e-258 895.6 668 68.0
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 4.0e-258 894.8 654 70.6
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.5e-257 892.9 664 68.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.0e-257 892.5 660 71.2
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.6e-257 892.1 663 70.3
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 3.4e-257 891.7 668 67.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.4e-257 891.3 668 69.0
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 9.8e-257 890.2 658 68.4
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.3e-256 889.8 664 68.5
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.3e-256 889.8 656 69.4
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.9e-256 888.6 665 68.7
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.9e-256 888.6 660 70.6
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 6.4e-256 887.5 648 70.7
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 8.3e-256 887.1 657 69.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.9e-255 885.9 654 69.3
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.4e-255 884.4 664 68.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 5.4e-255 884.4 665 69.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 2.0e-254 882.5 659 69.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 7.8e-254 880.6 658 69.3
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 5.0e-253 877.9 668 67.5
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 6.6e-253 877.5 656 69.8
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.1e-251 872.5 655 68.2
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.8e-251 872.1 657 68.6
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.8e-250 869.4 655 68.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.3e-250 869.0 655 67.8
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.2e-249 866.7 663 67.3
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.2e-249 866.7 665 67.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 5.8e-249 864.4 664 67.2
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 7.5e-249 864.0 695 65.5
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 7.5e-249 864.0 663 66.8
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.7e-248 862.8 654 67.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.9e-248 861.3 661 67.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 4.1e-247 858.2 656 68.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.6e-246 856.3 658 67.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.7e-246 855.5 655 66.7
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.6e-246 854.7 659 67.2
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 2.8e-243 845.5 656 66.9
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.8e-242 842.8 653 66.5
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.0e-242 841.6 613 70.0
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.4e-241 838.2 694 64.7
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 5.8e-241 837.8 694 64.8
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 7.6e-241 837.4 668 65.4
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.2e-240 835.9 662 66.6
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.7e-240 835.1 660 66.7
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 7.8e-238 827.4 661 66.3
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.3e-237 826.6 654 67.0
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.9e-237 825.1 693 64.1
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.9e-231 806.2 660 63.6
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.1e-230 802.7 590 68.5
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.5e-230 802.0 619 67.9
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 2.3e-229 799.3 871 52.6
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.1e-229 798.1 605 67.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 6.2e-227 791.2 728 60.2
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 4.0e-226 788.5 663 63.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.3e-221 772.7 588 68.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.5e-220 770.0 592 68.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.0e-217 759.6 690 58.7
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.1e-207 727.2 662 59.5
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.5e-204 716.8 655 59.7
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 8.2e-203 711.1 661 57.8
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.1e-202 710.7 689 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.0e-189 667.5 667 54.0
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.3e-189 666.4 850 47.6
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.7e-189 664.8 478 70.5
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.1e-182 643.3 574 60.3
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 8.8e-181 637.9 510 66.1
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.2e-174 617.5 570 57.2
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.8e-170 603.6 477 65.2
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 4.1e-162 575.9 494 63.0
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.2e-155 553.5 605 53.9
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.2e-147 526.9 437 63.2
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.9e-123 446.0 430 56.3
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.3e-115 421.4 465 49.2
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.5e-108 396.4 346 61.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 3.7e-78 297.0 449 40.8
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.1e-77 293.5 205 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.3e-77 293.1 319 49.2
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.5e-76 291.6 201 74.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.7e-75 288.1 232 61.2
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.7e-67 261.5 181 71.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.4e-64 251.9 396 41.7
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.1e-61 240.4 170 68.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 7.2e-58 229.6 293 48.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.2e-54 218.0 251 51.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.4e-45 188.7 139 68.3
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 6.5e-43 179.9 168 58.9
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-41 174.9 427 31.9
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 6.1e-41 173.3 633 31.1
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 6.3e-38 163.3 147 56.5
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.9e-35 154.5 146 57.5
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.5e-34 151.4 92 78.3
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.2e-31 142.5 93 77.4
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 5.7e-31 140.2 99 69.7
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 2.9e-30 137.9 95 72.6
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-29 135.6 79 82.3
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 3.5e-28 131.0 155 49.7
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.0e-27 129.4 98 66.3
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.0e-27 129.4 115 57.4
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.9e-27 127.5 153 45.8
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 3.3e-26 124.4 164 43.3
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 9.5e-26 122.9 83 77.1
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.5e-20 104.4 90 65.6
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.3e-19 102.4 165 37.6
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.0e-19 100.5 67 76.1
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.2e-17 95.9 65 67.7
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.8e-17 94.7 159 40.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 3.6e-17 94.4 96 57.3
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.6e-15 88.2 63 68.3
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 3.2e-13 81.3 61 67.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-12 77.4 51 68.6
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 4.6e-12 77.4 50 72.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 4.6e-12 77.4 50 72.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 5.6e-10 70.5 50 64.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.4e-08 65.9 47 70.2
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.9e-06 58.2 62 43.5


User provided reference genes

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