Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 7.2e-127 457.6 295 100.0
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.4e-85 320.5 262 80.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.2e-82 309.3 284 78.5
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-75 287.3 160 91.2
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 2.2e-75 286.6 284 64.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.4e-75 285.0 299 69.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.1e-73 280.0 293 70.3
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.5e-73 279.3 280 77.1
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.6e-72 275.0 291 65.6
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 8.1e-70 268.1 277 69.0
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.1e-69 267.7 165 84.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.5e-68 263.8 164 84.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 7.6e-68 261.5 165 81.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 7.6e-68 261.5 164 83.5
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 7.6e-68 261.5 164 83.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 9.9e-68 261.2 171 79.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.3e-67 260.8 171 78.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.7e-67 260.4 196 71.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.7e-67 260.4 179 77.1
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-67 260.0 171 78.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-67 260.0 171 78.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.9e-67 259.6 169 78.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 8.4e-67 258.1 184 76.1
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.4e-66 257.3 176 77.8
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.9e-66 256.9 170 77.6
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.2e-66 255.8 166 80.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.4e-66 255.4 162 82.1
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 9.3e-66 254.6 163 80.4
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 9.3e-66 254.6 193 72.0
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.3e-66 254.6 195 71.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 9.3e-66 254.6 285 67.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 9.3e-66 254.6 172 77.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 9.3e-66 254.6 179 75.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-65 254.2 163 81.6
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.6e-65 253.8 154 84.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.6e-65 253.8 174 76.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.6e-65 253.8 263 69.6
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.1e-65 253.4 166 79.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.1e-65 253.4 195 71.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.5e-65 252.7 169 78.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.5e-65 252.7 167 76.6
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.6e-65 252.3 174 77.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 4.6e-65 252.3 168 81.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.0e-65 251.9 166 80.7
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 6.0e-65 251.9 186 74.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 7.9e-65 251.5 171 77.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 7.9e-65 251.5 169 78.1
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.0e-64 251.1 174 77.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.0e-64 251.1 159 78.6
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.0e-64 251.1 154 83.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.0e-64 251.1 170 77.6
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 154 83.8
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-64 250.0 164 79.3
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-64 250.0 165 80.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.3e-64 250.0 163 80.4
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.9e-64 249.2 174 77.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 5.1e-64 248.8 179 75.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 6.7e-64 248.4 166 78.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 8.7e-64 248.1 170 79.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 8.7e-64 248.1 173 76.3
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.1e-63 247.7 177 75.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-63 247.7 171 75.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.5e-63 247.3 166 79.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-63 246.9 164 78.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-63 246.9 164 78.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.9e-63 246.9 164 78.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.9e-63 246.9 151 82.8
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.9e-63 246.9 204 69.6
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.5e-63 246.5 150 83.3
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-63 246.5 151 82.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.3e-63 246.1 150 84.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.3e-63 246.1 176 76.7
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 4.3e-63 245.7 177 75.7
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.6e-63 245.4 178 74.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 5.6e-63 245.4 180 74.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 7.4e-63 245.0 161 78.9
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 7.4e-63 245.0 161 78.9
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.6e-63 244.6 177 74.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 9.6e-63 244.6 157 79.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 9.6e-63 244.6 157 79.6
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.6e-63 244.6 151 83.4
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 9.6e-63 244.6 192 69.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-62 244.2 174 74.1
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.3e-62 244.2 150 81.3
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.8e-62 243.0 175 73.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.8e-62 243.0 154 80.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.8e-62 243.0 150 82.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.7e-62 242.7 172 74.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.7e-62 242.7 291 61.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 6.2e-62 241.9 168 77.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 8.1e-62 241.5 155 81.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 8.1e-62 241.5 197 69.5
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 8.1e-62 241.5 140 87.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.1e-61 241.1 179 74.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-61 240.7 292 63.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-61 240.7 176 75.6
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.4e-61 240.0 153 83.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.1e-61 239.6 147 81.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.1e-61 239.6 179 73.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-61 239.6 176 73.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-61 239.6 176 73.9
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.0e-61 239.2 152 80.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.3e-61 238.8 201 69.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 5.3e-61 238.8 171 74.3
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.9e-61 238.4 151 80.8
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.5e-60 237.3 238 68.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.0e-60 236.9 139 86.3
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.8e-60 235.3 154 77.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.8e-60 235.3 145 82.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 7.6e-60 235.0 173 73.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.2e-59 233.4 168 72.6
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.9e-59 233.0 201 68.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-59 233.0 201 68.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.8e-59 232.6 201 67.7
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.8e-59 232.6 134 87.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.9e-59 232.3 200 67.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-58 231.1 199 67.8
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-58 229.9 153 76.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-58 229.9 153 76.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.2e-58 229.6 163 76.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 4.2e-58 229.2 150 78.0
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 5.5e-58 228.8 154 78.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 7.1e-58 228.4 151 81.5
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.3e-58 228.0 151 77.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 9.3e-58 228.0 149 79.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-56 223.8 195 66.7
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.8e-56 223.8 196 66.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.0e-56 223.0 153 73.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 3.0e-56 223.0 171 72.5
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 4.3e-55 219.2 192 65.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 9.6e-55 218.0 175 70.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.8e-54 216.5 158 74.7
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.7e-54 216.1 196 64.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.5e-50 203.4 130 79.2
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-49 200.3 195 60.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-49 200.3 195 60.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.0e-48 196.4 184 62.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 9.7e-47 191.4 144 72.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 4.1e-45 186.0 120 79.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.5e-44 184.1 157 63.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.4e-44 183.0 179 60.9
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-43 181.4 134 72.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-43 180.3 142 70.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.5e-42 176.8 149 61.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.2e-42 176.0 163 62.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.6e-41 172.9 168 61.3
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.6e-41 172.9 198 55.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-39 167.2 110 75.5
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.7e-38 162.9 121 66.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.9e-34 150.6 94 78.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-31 141.4 103 68.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.4e-31 138.7 95 72.6
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 7.4e-31 138.7 199 46.7
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 7.4e-31 138.7 199 46.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.7e-30 136.3 170 48.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.4e-29 134.4 136 56.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-29 133.3 191 45.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-18 96.7 193 40.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.3e-16 90.5 202 38.1
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.4e-13 81.3 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.1e-13 79.7 52 69.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-10 71.2 64 67.2
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-10 69.7 62 64.5


User provided reference genes

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