Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.8e-106 388.7 200 100.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 5.3e-97 357.8 221 85.5
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.2e-95 352.4 200 90.0
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.1e-94 350.1 200 87.5
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.2e-94 348.2 200 88.0
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 4.6e-93 344.7 216 83.3
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.3e-91 338.6 216 81.5
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 4.3e-91 338.2 216 81.0
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 5.7e-91 337.8 216 81.0
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 9.7e-91 337.0 216 80.6
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.3e-90 336.7 216 81.0
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.3e-90 336.7 216 81.0
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.6e-90 336.3 214 81.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 4.8e-90 334.7 216 80.1
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 4.8e-90 334.7 216 80.6
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 81.5
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 80.6
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 80.6
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 80.6
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 81.0
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 6.3e-90 334.3 216 80.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.4e-89 333.2 200 83.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 81.5
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.4e-89 333.2 216 79.2
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.1e-89 332.0 216 81.0
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-89 332.0 216 80.6
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-89 332.0 216 80.6
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 4.1e-89 331.6 216 79.6
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 5.3e-89 331.3 216 79.6
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 6.9e-89 330.9 216 80.1
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 9.0e-89 330.5 216 79.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 9.0e-89 330.5 200 85.0
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.5e-88 329.7 216 79.6
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.6
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 80.1
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.0e-88 329.3 216 79.6
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.6e-88 328.9 216 80.1
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 3.4e-88 328.6 216 79.6
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 3.4e-88 328.6 216 80.6
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.4e-88 328.6 216 80.1
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 4.5e-88 328.2 216 79.6
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 4.5e-88 328.2 216 78.7
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 7.6e-88 327.4 216 78.7
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.3e-87 326.6 216 80.1
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.3e-87 326.6 216 78.7
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 76.9
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 77.3
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 1.7e-87 326.2 199 83.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 78.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 79.2
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 77.3
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.7e-87 326.2 216 79.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 77.3
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 77.3
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 77.3
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.2e-87 325.9 216 79.2
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.2e-87 325.9 215 79.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 2.9e-87 325.5 216 76.9
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 2.9e-87 325.5 216 76.9
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 76.4
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 76.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 3.8e-87 325.1 216 78.7
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-87 324.7 216 76.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 78.2
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 78.2
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.5e-87 324.3 216 76.9
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.4e-86 323.2 216 78.7
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.4e-86 323.2 216 77.8
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 75.5
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 76.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 78.2
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.5e-86 322.4 216 78.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 3.2e-86 322.0 216 75.9
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 4.2e-86 321.6 216 75.0
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 4.2e-86 321.6 216 75.0
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 4.2e-86 321.6 216 77.3
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 4.2e-86 321.6 220 78.2
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 5.5e-86 321.2 216 75.9
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.2e-86 320.9 216 77.8
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 7.2e-86 320.9 216 75.0
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 7.2e-86 320.9 216 75.0
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 7.2e-86 320.9 216 76.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.2e-85 320.1 216 77.3
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.2e-85 320.1 216 77.3
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.6e-85 319.7 217 77.9
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.1e-85 319.3 216 77.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 2.1e-85 319.3 216 77.8
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.7e-85 318.9 215 77.2
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.7e-85 318.9 216 77.8
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.7e-85 318.9 216 77.3
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.7e-85 318.9 216 76.4
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.6e-85 318.2 215 77.2
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 4.6e-85 318.2 216 76.9
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 6.1e-85 317.8 216 75.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 7.9e-85 317.4 216 76.4
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-84 317.0 216 76.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.0e-84 317.0 216 76.9
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.3e-84 316.6 216 76.9
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.8e-84 316.2 216 75.9
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.3e-84 315.8 216 75.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.3e-84 315.8 216 75.5
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.9e-84 315.1 215 75.3
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.1e-84 314.7 216 76.4
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 6.7e-84 314.3 216 75.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 6.7e-84 314.3 216 76.4
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.9e-83 312.8 216 74.5
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.9e-83 312.8 227 74.4
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.3e-83 311.6 216 75.9
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 4.3e-83 311.6 216 73.6
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 9.7e-83 310.5 216 75.5
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 9.7e-83 310.5 216 75.9
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.2e-82 309.3 216 74.5
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.8e-82 308.9 200 79.5
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 4.8e-82 308.1 216 75.9
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.4e-81 306.6 221 73.3
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 9.1e-81 303.9 200 78.5
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.4e-80 302.0 221 72.4
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.3e-79 300.1 216 69.4
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.2e-78 295.0 200 77.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.2e-77 293.5 200 78.0
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.6e-77 293.1 200 76.5
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.1e-77 292.7 216 70.4
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.1e-77 292.7 199 77.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 3.9e-76 288.5 216 70.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.5e-75 286.6 218 69.3
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.5e-75 286.6 216 69.9
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.6e-75 285.8 216 69.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 5.7e-75 284.6 216 71.3
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 5.7e-75 284.6 216 71.3
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.7e-74 283.1 214 69.2
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 4.1e-73 278.5 216 65.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.0e-71 273.9 164 87.8
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.5e-70 269.2 200 72.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 9.4e-70 267.3 201 71.6
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 7.9e-69 264.2 165 81.2
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 3.0e-68 262.3 149 85.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 3.3e-67 258.8 276 55.4
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.7e-66 256.5 337 47.5
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.7e-66 256.5 165 78.2
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 7.0e-65 251.1 165 77.6
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.0e-65 251.1 209 63.6
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 5.9e-64 248.1 217 62.7
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 4.0e-60 235.3 196 67.3
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 6.7e-60 234.6 217 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.2e-55 219.5 144 71.5
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.1e-49 200.7 219 51.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 2.0e-48 196.4 136 79.4
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 7.7e-48 194.5 233 49.4
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.7e-43 178.3 135 73.3
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 7.8e-40 167.9 114 79.8
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.5e-38 163.7 243 48.1
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.5e-38 163.7 219 43.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 4.0e-36 155.6 108 67.6
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 4.0e-36 155.6 108 67.6
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.0e-35 153.3 212 43.9
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 5.4e-33 145.2 101 80.2
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.2e-27 127.5 65 86.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.4e-27 125.9 65 83.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.7e-26 123.6 106 61.3
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.7e-26 123.6 65 84.6
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-24 116.3 64 75.0
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.0e-23 112.1 81 67.9
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-18 97.1 72 76.4
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.1e-17 94.4 63 81.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.2e-17 92.8 68 75.0
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 2.4e-09 66.6 39 71.8
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 9.2e-09 64.7 39 69.2
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 2.7e-08 63.2 48 62.5
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 2.7e-08 63.2 48 62.5
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 2.7e-08 63.2 48 62.5
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.0e-07 61.2 48 60.4


User provided reference genes

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