Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.0e-52 208.0 117 100.0
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 1.5e-22 109.8 111 57.7
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.7e-21 104.8 110 56.4
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.7e-21 104.8 109 55.0
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 6.2e-21 104.4 114 55.3
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 8.0e-21 104.0 112 55.4
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 1.8e-20 102.8 112 55.4
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.8e-20 102.8 116 55.2
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.8e-20 102.8 116 55.2
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.3e-20 102.4 117 53.8
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.3e-20 102.4 108 56.5
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.3e-20 102.4 110 54.5
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 5.2e-20 101.3 113 56.6
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 6.8e-20 100.9 114 55.3
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-19 100.1 113 54.9
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-19 100.1 113 54.9
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-19 100.1 113 54.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.2e-19 100.1 104 58.7
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.5e-19 99.8 114 54.4
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.5e-19 99.8 114 54.4
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.5e-19 99.8 114 54.4
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 1.5e-19 99.8 114 54.4
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 1.3e-18 96.7 116 52.6
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.3e-18 96.7 122 52.5
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.9e-18 95.5 114 52.6
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 6.4e-18 94.4 86 60.5
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 8.3e-18 94.0 124 47.6
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 2.4e-17 92.4 125 48.0
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.4e-17 92.4 114 53.5
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.2e-16 90.1 111 52.3
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.5e-16 88.6 130 46.2
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.6e-16 88.2 130 46.2
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.6e-16 88.2 112 49.1
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.6e-16 88.2 112 49.1
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 4.6e-16 88.2 113 52.2
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.0e-15 87.0 125 49.6
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-15 86.3 112 49.1
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 3.0e-15 85.5 123 47.2
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 8.6e-15 84.0 112 47.3
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.5e-14 83.2 110 47.3
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.5e-14 82.4 101 52.5
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 4.3e-14 81.6 125 46.4
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 5.6e-14 81.3 128 47.7
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.6e-13 79.7 122 45.1
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.8e-13 79.0 72 68.1
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 2.8e-13 79.0 117 44.4
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.7e-13 78.2 127 48.8
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.7e-13 78.2 120 45.0
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-12 77.0 130 43.1
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 2.3e-12 75.9 119 45.4
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 3.1e-12 75.5 125 43.2
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 4.0e-12 75.1 133 45.1
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.0e-12 75.1 135 44.4
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 6.8e-12 74.3 113 45.1
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 8.9e-12 73.9 113 46.0
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 2.0e-11 72.8 113 45.1
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 2.0e-11 72.8 125 44.8
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 3.4e-11 72.0 126 44.4
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 4.4e-11 71.6 125 43.2
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 4.4e-11 71.6 113 44.2
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 5.8e-11 71.2 71 64.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 5.8e-11 71.2 113 46.0
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.3e-10 70.1 113 44.2
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.7e-10 69.7 114 43.9
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 1.7e-10 69.7 86 50.0
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.7e-10 69.7 111 45.9
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 3.7e-10 68.6 125 40.8
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 3.7e-10 68.6 113 44.2
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 4.9e-10 68.2 113 44.2
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 6.4e-10 67.8 143 37.8
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 8.3e-10 67.4 155 38.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-09 67.0 114 42.1
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-09 67.0 114 42.1
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.1e-09 67.0 114 42.1
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.1e-09 67.0 139 41.0
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.4e-09 66.6 114 43.0
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.9e-09 66.2 126 41.3
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.9e-09 66.2 138 38.4
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.4e-09 65.9 140 39.3
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 2.4e-09 65.9 127 40.2
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 2.4e-09 65.9 125 40.8
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 2.4e-09 65.9 128 40.6
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 3.2e-09 65.5 125 40.0
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 4.1e-09 65.1 131 42.7
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 4.1e-09 65.1 127 39.4
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.4e-09 64.7 135 41.5
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 5.4e-09 64.7 125 39.2
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 5.4e-09 64.7 143 37.1
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 7.1e-09 64.3 126 41.3
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 7.1e-09 64.3 133 39.8
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 9.2e-09 63.9 123 42.3
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.2e-08 63.5 128 39.1
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 2.1e-08 62.8 126 38.9
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 2.1e-08 62.8 126 39.7
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 2.1e-08 62.8 126 39.7
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 3.5e-08 62.0 123 41.5
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.6e-08 61.6 136 39.0
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 7.8e-08 60.8 69 56.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 7.8e-08 60.8 130 38.5
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.0e-07 60.5 122 38.5
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.0e-07 60.5 124 38.7
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 1.3e-07 60.1 125 38.4
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.3e-07 60.1 95 46.3
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 1.7e-07 59.7 122 38.5
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-07 59.7 116 41.4
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-07 59.7 122 41.0
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 2.3e-07 59.3 119 37.8
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 3.0e-07 58.9 125 39.2
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 3.0e-07 58.9 125 37.6
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 3.0e-07 58.9 93 43.0
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 3.0e-07 58.9 76 52.6
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.9e-07 58.5 136 38.2
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.1e-07 58.2 107 43.0
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 6.6e-07 57.8 81 50.6
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.6e-07 57.8 81 50.6
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 8.6e-07 57.4 136 37.5
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.1e-06 57.0 116 38.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 1.5e-06 56.6 126 39.7
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.5e-06 55.8 86 44.2
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 2.5e-06 55.8 86 43.0
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 4.3e-06 55.1 83 44.6
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.3e-06 55.1 58 60.3
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 4.3e-06 55.1 126 35.7
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 5.6e-06 54.7 60 60.0
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 5.6e-06 54.7 70 51.4
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 7.3e-06 54.3 125 36.0
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 9.5e-06 53.9 32 87.5


User provided reference genes

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