Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 9.0e-96 353.6 181 100.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 3.1e-48 195.7 113 80.5
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 3.1e-48 195.7 113 80.5
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.6e-47 193.4 113 79.6
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 4.5e-47 191.8 113 79.6
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 5.9e-47 191.4 113 78.8
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 5.9e-47 191.4 113 78.8
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 5.9e-47 191.4 113 78.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 7.7e-47 191.0 113 78.8
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 7.7e-47 191.0 113 79.6
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 7.7e-47 191.0 113 77.0
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.0e-46 190.7 113 78.8
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.0e-46 190.7 113 77.0
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.0e-46 190.7 113 77.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.0e-46 190.7 113 77.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.3e-46 190.3 113 79.6
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.7e-46 189.9 114 76.3
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.7e-46 189.9 113 77.9
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.7e-46 189.9 110 80.0
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.3e-46 189.5 113 77.0
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.3e-46 189.5 113 78.8
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.9e-46 189.1 113 77.0
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.9e-46 189.1 113 77.9
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 3.8e-46 188.7 113 77.9
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 3.8e-46 188.7 113 77.9
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 5.0e-46 188.3 113 77.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 5.0e-46 188.3 113 77.0
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 5.0e-46 188.3 113 77.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 6.6e-46 188.0 113 77.0
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.6e-46 187.6 113 77.9
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 8.6e-46 187.6 113 77.9
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.1e-45 187.2 113 77.0
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.1e-45 187.2 114 74.6
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.1e-45 187.2 113 76.1
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.1e-45 187.2 113 75.2
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.1e-45 187.2 113 77.0
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.5e-45 186.8 113 77.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.5e-45 186.8 113 77.0
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.5e-45 186.8 113 77.0
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.9e-45 186.4 113 76.1
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.9e-45 186.4 113 76.1
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.9e-45 186.4 113 76.1
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.9e-45 186.4 113 77.9
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.5e-45 186.0 113 77.0
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.5e-45 186.0 113 76.1
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.5e-45 186.0 113 77.0
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 2.5e-45 186.0 110 78.2
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 3.3e-45 185.7 113 76.1
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.3e-45 185.7 113 76.1
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.3e-45 185.7 112 76.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 3.3e-45 185.7 113 76.1
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 4.2e-45 185.3 113 77.0
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 5.5e-45 184.9 113 76.1
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 7.2e-45 184.5 113 76.1
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.2e-45 184.5 113 76.1
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 7.2e-45 184.5 113 76.1
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 9.5e-45 184.1 113 75.2
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 9.5e-45 184.1 113 76.1
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 9.5e-45 184.1 113 77.0
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 9.5e-45 184.1 113 77.0
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-44 183.7 113 75.2
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.2e-44 183.7 113 77.9
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.6e-44 183.3 113 76.1
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.6e-44 183.3 113 75.2
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.6e-44 183.3 113 76.1
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 77.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 77.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 77.0
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 77.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 75.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 2.1e-44 183.0 113 75.2
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.8e-44 182.6 113 77.0
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.8e-44 182.6 113 76.1
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.8e-44 182.6 113 77.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.8e-44 182.6 113 74.3
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.8e-44 182.6 113 77.0
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.6e-44 182.2 113 74.3
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 3.6e-44 182.2 109 78.0
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 77.0
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 76.1
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 76.1
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 77.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 77.0
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 4.7e-44 181.8 113 75.2
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 8.0e-44 181.0 113 76.1
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 8.0e-44 181.0 113 76.1
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 8.0e-44 181.0 113 76.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.0e-43 180.6 113 76.1
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.4e-43 180.3 113 75.2
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.8e-43 179.9 113 76.1
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.8e-43 179.9 113 76.1
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.8e-43 179.9 113 77.0
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.3e-43 179.5 113 74.3
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.3e-43 179.5 113 75.2
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.3e-43 179.5 110 75.5
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 4.0e-43 178.7 113 73.5
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 6.8e-43 177.9 113 73.5
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 6.8e-43 177.9 113 73.5
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.5e-42 176.8 112 73.2
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.5e-42 176.8 111 74.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.6e-42 176.0 113 74.3
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 3.4e-42 175.6 111 73.9
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 4.4e-42 175.3 113 72.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 5.7e-42 174.9 113 71.7
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 5.7e-42 174.9 111 73.9
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 9.8e-42 174.1 105 78.1
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.8e-42 174.1 113 73.5
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.2e-41 172.9 114 72.8
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.8e-41 172.6 113 71.7
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.7e-41 172.2 113 71.7
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 3.7e-41 172.2 113 72.6
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 8.3e-41 171.0 110 73.6
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.7e-39 166.0 113 69.9
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-37 160.2 83 90.4
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-37 160.2 83 90.4
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.9e-37 159.8 110 68.2
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.4e-35 153.7 112 65.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.4e-34 149.1 95 74.7
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.9e-32 143.3 94 69.1
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 2.4e-32 142.9 95 69.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 6.0e-31 138.3 113 60.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.2e-28 130.6 120 60.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 8.9e-27 124.4 106 54.7
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 4.1e-24 115.5 77 70.1
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.7e-23 112.8 111 50.5
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 6.0e-23 111.7 77 68.8
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 3.6e-20 102.4 109 50.5
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.0e-19 99.0 86 57.0
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-17 94.0 87 55.2
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-17 94.0 87 55.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 7.1e-16 88.2 60 68.3
SEGI_11647 Sequoiadendron giganteum HOM05D001499 ORTHO05D001560 4.6e-15 85.5 54 81.5
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.9e-13 80.1 91 50.5
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 4.0e-11 72.4 83 47.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.2e-10 70.9 66 51.5
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.5e-07 59.3 28 96.4
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 8.7e-06 54.7 56 55.4


User provided reference genes

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