Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.8e-75 286.2 183 100.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.4e-56 222.6 207 71.5
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 8.4e-17 91.3 137 43.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.4e-16 90.5 141 51.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.4e-16 90.5 134 53.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.2e-16 89.4 100 50.0
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 7.1e-16 88.2 137 50.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.2e-15 87.4 138 42.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.5e-15 85.9 126 54.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.0e-15 85.1 133 41.4
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.3e-14 83.2 134 47.8
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.3e-14 83.2 133 48.9
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.0e-14 82.8 142 45.1
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 3.9e-14 82.4 132 50.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.7e-14 81.3 135 38.5
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 8.7e-14 81.3 141 50.4
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 8.7e-14 81.3 139 41.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.1e-13 80.9 124 41.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.1e-13 80.9 82 52.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.5e-13 80.5 136 40.4
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.5e-13 80.5 136 40.4
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-13 79.7 85 55.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 5.7e-13 78.6 82 56.1
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 7.4e-13 78.2 142 47.2
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 9.7e-13 77.8 138 42.0
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.3e-12 77.4 95 44.2
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.3e-12 77.4 134 40.3
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.6e-12 77.0 87 51.7
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.2e-12 76.6 144 46.5
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.2e-12 76.6 137 43.1
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.8e-12 76.3 131 48.9
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.8e-12 76.3 82 50.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.7e-12 75.9 134 36.6
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.7e-12 75.9 77 57.1
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 3.7e-12 75.9 127 49.6
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.8e-12 75.5 96 46.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 4.8e-12 75.5 133 45.9
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.2e-12 74.7 83 54.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.2e-12 74.7 134 41.8
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 8.2e-12 74.7 137 40.1
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 8.2e-12 74.7 77 57.1
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 8.2e-12 74.7 77 57.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.4e-11 73.9 82 50.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.8e-11 73.6 79 50.6
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.4e-11 73.2 80 50.0
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.4e-11 73.2 137 39.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 4.1e-11 72.4 87 50.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 4.1e-11 72.4 92 46.7
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.3e-11 72.0 72 56.9
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 6.9e-11 71.6 136 47.1
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 9.0e-11 71.2 131 47.3
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 9.0e-11 71.2 132 49.2
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.5e-10 70.5 133 45.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.5e-10 70.5 136 36.8
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.0e-10 70.1 75 52.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.0e-10 70.1 95 42.1
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.6e-10 69.7 136 41.9
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-10 68.9 92 44.6
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 4.5e-10 68.9 137 39.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 5.9e-10 68.6 93 46.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 5.9e-10 68.6 92 45.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 5.9e-10 68.6 92 45.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 5.9e-10 68.6 92 45.7
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 5.9e-10 68.6 92 45.7
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 5.9e-10 68.6 132 40.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 7.7e-10 68.2 75 56.0
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.0e-09 67.8 89 44.9
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.0e-09 67.8 130 40.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-09 67.4 94 44.7
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.3e-09 67.4 87 47.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-09 67.4 142 43.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-09 67.0 77 50.6
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.2e-09 66.6 89 46.1
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.2e-09 66.6 131 36.6
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.9e-09 66.2 90 44.4
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.9e-09 66.2 130 37.7
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.8e-09 65.9 89 44.9
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.8e-09 65.9 82 48.8
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.8e-09 65.9 93 46.2
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 5.0e-09 65.5 138 37.0
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-09 65.5 134 41.8
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-09 65.5 91 47.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-09 65.5 134 41.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 5.0e-09 65.5 134 41.8
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 5.0e-09 65.5 84 50.0
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.5e-09 65.1 88 43.2
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.5e-09 65.1 133 37.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 6.5e-09 65.1 77 48.1
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 6.5e-09 65.1 88 46.6
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.5e-09 65.1 154 40.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 8.5e-09 64.7 88 46.6
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.5e-09 64.7 87 46.0
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 8.5e-09 64.7 89 43.8
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 8.5e-09 64.7 89 43.8
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 8.5e-09 64.7 88 47.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 8.5e-09 64.7 89 47.2
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 8.5e-09 64.7 133 45.9
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.1e-08 64.3 135 39.3
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.4e-08 63.9 127 44.9
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-08 63.9 135 39.3
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.4e-08 63.9 84 47.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.4e-08 63.9 87 49.4
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.4e-08 63.9 87 49.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-08 63.5 89 43.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-08 63.5 77 51.9
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.9e-08 63.5 84 48.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.5e-08 63.2 132 33.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.5e-08 63.2 83 45.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.2e-08 62.8 86 50.0
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.2e-08 62.8 87 41.4
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.2e-08 62.4 88 43.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 4.2e-08 62.4 129 41.1
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.5e-08 62.0 75 45.3
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 7.2e-08 61.6 76 52.6
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 9.4e-08 61.2 76 52.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 9.4e-08 61.2 76 52.6
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 9.4e-08 61.2 79 50.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.6e-07 60.5 89 44.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.6e-07 60.5 104 52.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.6e-07 60.5 83 43.4
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.1e-07 60.1 82 50.0
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.1e-07 60.1 82 50.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.7e-07 59.7 77 45.5
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-07 59.7 79 48.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.7e-07 59.7 82 47.6
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.7e-07 59.7 99 46.5
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.7e-07 59.7 95 45.3
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.7e-07 59.7 78 50.0
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.6e-07 59.3 81 43.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.6e-07 59.3 75 52.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.6e-07 59.3 79 46.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.6e-07 58.9 80 45.0
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 4.6e-07 58.9 75 53.3
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 6.1e-07 58.5 82 42.7
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.1e-07 58.5 70 50.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 6.1e-07 58.5 77 48.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.9e-07 58.2 91 44.0
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-06 57.4 81 44.4
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.4e-06 57.4 79 49.4
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.4e-06 57.4 77 42.9
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-06 57.0 77 48.1
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-06 57.0 80 45.0
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.8e-06 57.0 75 50.7
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.8e-06 57.0 90 42.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.8e-06 57.0 90 44.4
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.3e-06 56.6 82 42.7
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.3e-06 56.6 137 34.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-06 56.6 94 40.4
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 3.0e-06 56.2 78 47.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 3.0e-06 56.2 78 47.4
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 3.0e-06 56.2 78 47.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.0e-06 56.2 79 46.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.9e-06 55.8 81 45.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.1e-06 55.5 76 46.1
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.1e-06 55.5 79 44.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.1e-06 55.5 80 43.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 6.7e-06 55.1 78 51.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 6.7e-06 55.1 79 44.3


User provided reference genes

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