Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33057 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 2.1e-39 165.2 82 100.0
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 5.1e-22 107.5 73 68.5
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 6.7e-22 107.1 73 65.8
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 1.1e-21 106.3 73 63.0
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 1.5e-21 105.9 73 65.8
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 2.5e-21 105.1 73 64.4
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 2.5e-21 105.1 71 66.2
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 4.3e-21 104.4 73 64.4
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 5.6e-21 104.0 71 64.8
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 5.6e-21 104.0 73 63.0
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.4e-21 103.6 73 63.0
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.3e-20 102.8 73 65.8
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 1.3e-20 102.8 70 68.6
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 1.3e-20 102.8 71 64.8
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 1.6e-20 102.4 67 68.7
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 2.1e-20 102.1 70 65.7
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 2.1e-20 102.1 71 62.0
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 2.1e-20 102.1 71 63.4
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 2.1e-20 102.1 77 61.0
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 2.8e-20 101.7 71 60.6
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 3.7e-20 101.3 73 63.0
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 3.7e-20 101.3 73 64.4
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 3.7e-20 101.3 73 64.4
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 4.8e-20 100.9 73 58.9
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 4.8e-20 100.9 73 64.4
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 4.8e-20 100.9 71 63.4
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 4.8e-20 100.9 73 65.8
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 4.8e-20 100.9 73 63.0
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 8.1e-20 100.1 71 62.0
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 1.1e-19 99.8 70 64.3
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 1.4e-19 99.4 71 60.6
Nn4g23884 Nelumbo nucifera HOM05D003510 ORTHO05D004144 1.8e-19 99.0 71 64.8
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 1.8e-19 99.0 73 61.6
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 2.4e-19 98.6 73 60.3
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 2.4e-19 98.6 73 61.6
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 2.4e-19 98.6 73 61.6
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 2.4e-19 98.6 73 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 3.1e-19 98.2 67 67.2
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 3.1e-19 98.2 73 64.4
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 3.1e-19 98.2 73 64.4
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 3.1e-19 98.2 73 58.9
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 3.1e-19 98.2 67 65.7
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 4.0e-19 97.8 73 58.9
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 4.0e-19 97.8 73 58.9
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.0e-19 97.8 73 61.6
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 4.0e-19 97.8 73 61.6
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 5.3e-19 97.4 71 59.2
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 6.9e-19 97.1 70 62.9
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 6.9e-19 97.1 73 60.3
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 6.9e-19 97.1 71 59.2
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 9.0e-19 96.7 68 66.2
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 9.0e-19 96.7 73 60.3
Gohir.A04G098050 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.2e-18 96.3 73 60.3
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 1.2e-18 96.3 71 63.4
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.2e-18 96.3 66 65.2
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 1.5e-18 95.9 73 57.5
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 2.0e-18 95.5 68 63.2
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 2.0e-18 95.5 70 61.4
Gorai.012G122300 Gossypium raimondii HOM05D003510 ORTHO05D004144 2.6e-18 95.1 73 60.3
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 2.6e-18 95.1 68 61.8
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 2.6e-18 95.1 72 58.3
SMO012G0036 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 3.4e-18 94.7 67 64.2
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 4.5e-18 94.4 71 60.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.5e-18 94.4 67 64.2
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 4.5e-18 94.4 71 57.7
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 5.8e-18 94.0 71 59.2
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 5.8e-18 94.0 71 60.6
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 7.6e-18 93.6 73 58.9
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.3e-17 92.8 71 57.7
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.3e-17 92.8 70 58.6
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.3e-17 92.8 72 55.6
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 1.3e-17 92.8 72 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 1.7e-17 92.4 67 59.7
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 1.7e-17 92.4 71 59.2
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.7e-17 92.4 71 57.7
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 1.7e-17 92.4 70 61.4
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 2.9e-17 91.7 70 58.6
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 2.9e-17 91.7 73 57.5
Gohir.A04G098100 Gossypium hirsutum HOM05D003510 ORTHO05D004144 3.8e-17 91.3 73 60.3
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.8e-17 91.3 73 54.8
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 4.9e-17 90.9 71 56.3
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 8.4e-17 90.1 70 57.1
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 8.4e-17 90.1 71 56.3
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 8.4e-17 90.1 63 61.9
AUR62022280 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.1e-16 89.7 77 50.6
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.4e-16 89.4 70 55.7
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.4e-16 89.4 70 55.7
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.4e-16 89.4 70 55.7
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.4e-16 89.4 70 55.7
AUR62044675 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.4e-16 89.4 70 55.7
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 1.9e-16 89.0 57 68.4
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.5e-16 88.6 71 57.7
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 2.5e-16 88.6 70 57.1
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 2.5e-16 88.6 72 58.3
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.2e-16 88.2 67 56.7
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 3.2e-16 88.2 57 70.2
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 3.2e-16 88.2 72 55.6
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.2e-16 88.2 58 63.8
Gohir.D04G137850 Gossypium hirsutum HOM05D003510 ORTHO05D004144 7.1e-16 87.0 73 57.5
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 7.1e-16 87.0 68 55.9
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 9.3e-16 86.7 65 60.0
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 9.3e-16 86.7 67 58.2
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 9.3e-16 86.7 68 54.4
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.2e-15 86.3 70 55.7
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 1.2e-15 86.3 65 60.0
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 1.2e-15 86.3 72 54.2
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 1.6e-15 85.9 61 62.3
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 1.6e-15 85.9 72 55.6
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 2.1e-15 85.5 70 54.3
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 2.1e-15 85.5 70 54.3
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 2.1e-15 85.5 68 55.9
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.7e-15 85.1 57 64.9
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 3.5e-15 84.7 75 57.3
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 3.5e-15 84.7 71 52.1
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 3.5e-15 84.7 62 62.9
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 3.5e-15 84.7 62 64.5
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 3.5e-15 84.7 65 58.5
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 3.5e-15 84.7 65 58.5
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 4.6e-15 84.3 65 58.5
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 7.9e-15 83.6 65 58.5
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 7.9e-15 83.6 66 56.1
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 1.0e-14 83.2 70 58.6
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 1.3e-14 82.8 68 48.5
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.3e-14 82.8 68 54.4
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 1.8e-14 82.4 73 52.1
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.0e-14 81.6 72 55.6
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 3.9e-14 81.3 73 50.7
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 3.9e-14 81.3 73 50.7
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 8.7e-14 80.1 73 50.7
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 1.1e-13 79.7 97 42.3
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 1.5e-13 79.3 66 54.5
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.5e-13 78.6 97 41.2
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 4.3e-13 77.8 66 48.5
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 7.4e-13 77.0 74 50.0
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 9.6e-13 76.6 66 54.5
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 2.1e-12 75.5 68 51.5
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.8e-12 75.1 71 49.3
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 3.7e-12 74.7 70 51.4
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 8.2e-12 73.6 55 58.2
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 1.1e-11 73.2 51 62.7
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.4e-11 72.8 69 49.3
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.4e-11 72.8 76 48.7
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 2.4e-11 72.0 68 48.5
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 5.3e-11 70.9 60 51.7
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 1.2e-10 69.7 66 47.0
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 1.5e-10 69.3 60 51.7
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 1.5e-10 69.3 70 45.7
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 1.5e-10 69.3 66 51.5
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 3.4e-10 68.2 69 43.5
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 4.5e-10 67.8 72 41.7
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 1.0e-09 66.6 55 54.5
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.3e-09 66.2 61 49.2
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 2.2e-09 65.5 69 44.9
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 3.8e-09 64.7 57 50.9
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.8e-09 64.7 68 47.1
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 7.9e-07 57.0 51 56.9
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 7.9e-07 57.0 61 41.0
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.0e-06 56.6 45 55.6
Zm00001eb249670 Zea mays HOM05D003510 ORTHO05D004144 1.3e-06 56.2 63 49.2
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 2.3e-06 55.5 68 32.4


User provided reference genes

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