Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21388 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 6.2e-169 597.4 313 100.0
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 3.1e-83 312.8 248 69.8
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 5.8e-82 308.5 223 72.2
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 2.9e-81 306.2 225 71.6
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 1.4e-80 303.9 247 68.0
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 1.6e-79 300.4 249 66.3
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 4.6e-79 298.9 249 65.1
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 6.0e-79 298.5 224 68.8
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 1.3e-78 297.4 246 65.9
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 1.3e-78 297.4 247 64.4
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 1.7e-78 297.0 225 70.7
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 2.3e-78 296.6 243 65.4
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 5.0e-78 295.4 245 64.9
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 6.6e-78 295.0 259 61.8
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 8.6e-78 294.7 258 61.2
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 1.1e-77 294.3 223 70.4
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 1.1e-77 294.3 249 64.7
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 1.9e-77 293.5 247 66.0
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 2.5e-77 293.1 247 64.0
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 5.6e-77 292.0 248 63.7
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 5.6e-77 292.0 244 65.6
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 1.2e-76 290.8 224 68.8
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 1.6e-76 290.4 219 70.8
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.1e-76 290.0 224 67.4
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 2.1e-76 290.0 252 63.5
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 2.3e-75 286.6 247 64.4
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 2.3e-75 286.6 246 63.4
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 4.0e-75 285.8 267 58.8
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 5.2e-75 285.4 255 62.0
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 5.2e-75 285.4 225 67.1
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 6.8e-75 285.0 249 61.4
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 6.8e-75 285.0 248 62.5
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 1.2e-74 284.3 247 62.8
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 1.5e-74 283.9 175 81.1
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 1.5e-74 283.9 244 63.9
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 3.4e-74 282.7 244 62.7
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 3.4e-74 282.7 244 63.5
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 4.4e-74 282.3 242 64.0
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 5.8e-74 282.0 287 56.1
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 1.7e-73 280.4 246 62.2
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 2.2e-73 280.0 265 58.5
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 2.2e-73 280.0 287 55.7
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 3.7e-73 279.3 227 65.6
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 4.9e-73 278.9 244 61.9
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 4.9e-73 278.9 242 63.6
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 6.4e-73 278.5 244 62.3
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 8.3e-73 278.1 241 63.5
TAR371G0068 Trochodendron aralioides HOM05D003355 ORTHO05D006192 1.4e-72 277.3 225 68.0
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 3.2e-72 276.2 250 62.8
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 3.2e-72 276.2 226 65.9
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 3.2e-72 276.2 247 61.9
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 4.1e-72 275.8 224 64.7
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 1.2e-71 274.2 247 59.9
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 1.2e-71 274.2 251 59.4
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 1.2e-71 274.2 241 62.7
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 1.2e-71 274.2 249 63.5
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 2.1e-71 273.5 248 61.3
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 2.7e-71 273.1 252 60.3
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 4.6e-71 272.3 247 59.5
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 4.6e-71 272.3 247 60.3
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.0e-71 271.9 222 65.8
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 7.8e-71 271.6 244 61.9
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 1.3e-70 270.8 247 59.1
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 1.7e-70 270.4 244 60.7
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 1.7e-70 270.4 247 58.3
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 1.7e-70 270.4 245 59.2
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.0e-70 269.6 231 64.1
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 5.1e-70 268.9 225 62.2
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 2.5e-69 266.5 225 62.2
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 2.5e-69 266.5 226 63.7
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 1.2e-68 264.2 224 61.6
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 1.2e-68 264.2 244 59.0
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 6.2e-68 261.9 253 60.9
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 6.2e-68 261.9 262 55.3
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 1.4e-67 260.8 244 60.7
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.4e-67 260.8 226 63.3
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 1.4e-67 260.8 244 58.2
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 2.3e-67 260.0 249 58.2
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 4.0e-67 259.2 244 59.8
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.5e-66 257.3 241 61.0
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 3.4e-66 256.1 228 61.8
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 4.4e-66 255.8 234 60.3
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 2.4e-64 250.0 249 58.6
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 2.4e-64 250.0 249 58.6
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 2.1e-63 246.9 244 56.6
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 2.7e-63 246.5 169 75.7
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 3.5e-63 246.1 247 57.9
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 7.8e-63 245.0 222 60.8
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 7.8e-63 245.0 224 62.1
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 1.0e-62 244.6 248 55.6
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 1.3e-62 244.2 250 55.6
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 1.7e-62 243.8 223 60.5
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 2.3e-62 243.4 261 56.3
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 5.1e-62 242.3 235 60.0
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 8.6e-62 241.5 168 75.0
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 3.3e-61 239.6 226 58.0
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 5.6e-61 238.8 243 57.2
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 5.6e-61 238.8 245 56.3
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 7.3e-61 238.4 290 50.7
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 9.5e-61 238.0 225 59.1
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 9.5e-61 238.0 283 49.8
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 3.6e-60 236.1 255 53.7
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 6.2e-60 235.3 284 50.7
Os01g0713800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 8.1e-60 235.0 244 57.4
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 1.1e-59 234.6 290 50.0
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.4e-59 234.2 290 50.0
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 1.4e-59 234.2 247 52.6
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 1.8e-59 233.8 244 55.3
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 3.1e-59 233.0 246 56.1
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 1.5e-58 230.7 243 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4702 Anthoceros agrestis HOM05D003355 ORTHO05D006192 2.0e-58 230.3 169 71.6
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 5.8e-58 228.8 122 92.6
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 5.8e-58 228.8 249 56.2
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 1.7e-57 227.3 245 53.1
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 2.2e-57 226.9 286 50.0
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 4.9e-57 225.7 247 52.6
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 1.9e-56 223.8 174 65.5
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 2.4e-56 223.4 137 81.0
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 2.4e-56 223.4 243 55.1
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 9.2e-56 221.5 172 65.1
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 6.0e-55 218.8 247 52.2
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 7.8e-55 218.4 171 66.1
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 4.3e-53 212.6 179 62.6
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 1.8e-51 207.2 130 79.2
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 3.8e-49 199.5 246 51.2
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 8.4e-49 198.4 235 52.8
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 1.1e-43 181.4 244 48.0
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 1.3e-41 174.5 179 53.6
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 6.4e-41 172.2 240 45.4
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 1.6e-36 157.5 230 43.9
GSVIVG01012285001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.8e-28 129.4 76 80.3
unitig_46.g18517 Utricularia gibba HOM05D003355 ORTHO05D006192 1.2e-26 124.8 171 48.0
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 5.8e-26 122.5 67 88.1
CAN.G322.12 Capsicum annuum HOM05D003355 ORTHO05D006192 2.4e-19 100.5 66 74.2
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 5.9e-18 95.9 97 50.5
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 2.9e-17 93.6 142 45.8
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 3.9e-14 83.2 54 74.1
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 1.5e-13 81.3 54 72.2
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 3.7e-12 76.6 107 42.1
Glyma.09G058066 Glycine max HOM05D003355 ORTHO05D013882 3.7e-12 76.6 48 70.8
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 5.3e-11 72.8 76 51.3
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 2.9e-09 67.0 54 63.0
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 3.8e-09 66.6 45 75.6
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 1.4e-08 64.7 92 41.3
CAN.G79.30 Capsicum annuum HOM05D003355 ORTHO05D115802 3.6e-07 60.1 169 34.9
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 4.7e-07 59.7 51 64.7
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 1.0e-06 58.5 81 35.8
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.8e-06 57.8 81 34.6
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 3.9e-06 56.6 81 34.6
MD02G1058900 Malus domestica HOM05D003355 ORTHO05D247873 5.1e-06 56.2 54 53.7
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 6.7e-06 55.8 77 37.7


User provided reference genes

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