Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 0.0e+00 1335.9 678 100.0
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 5.6e-106 389.4 690 38.7
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 6.4e-102 375.9 682 38.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 4.6e-100 369.8 687 37.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 5.6e-90 336.3 693 33.8
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.2e-89 335.1 692 35.4
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.4e-87 326.6 684 34.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.7e-86 324.7 682 34.9
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.9e-82 311.2 699 34.3
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 5.6e-82 309.7 685 34.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 5.6e-82 309.7 688 33.4
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.4e-80 304.3 687 34.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.8e-80 302.8 682 34.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.2e-79 302.0 680 33.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.4e-79 300.1 687 34.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.9e-78 297.4 682 34.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.1e-77 295.4 684 34.6
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.4e-77 295.0 680 33.2
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.2e-76 292.0 687 33.5
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.2e-76 292.0 683 32.2
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 7.8e-76 289.3 681 33.2
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.0e-75 288.9 678 32.6
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.0e-75 288.9 678 32.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.0e-75 287.3 686 32.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 6.6e-75 286.2 683 33.2
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 6.6e-75 286.2 680 33.7
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 8.6e-75 285.8 681 33.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.1e-74 285.4 718 31.3
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.5e-74 285.0 681 32.7
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.9e-74 284.6 686 32.7
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.9e-74 284.6 679 32.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 7.3e-74 282.7 680 32.1
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 7.3e-74 282.7 679 33.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 7.3e-74 282.7 681 32.7
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 9.6e-74 282.3 678 33.0
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-73 282.0 680 32.1
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.8e-73 280.8 690 30.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 6.2e-73 279.6 688 33.1
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.2e-73 279.6 680 31.9
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 4.0e-72 276.9 683 33.4
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.0e-72 276.9 679 32.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 6.9e-72 276.2 680 31.8
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 9.0e-72 275.8 685 33.4
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.2e-71 275.4 685 33.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-71 273.9 680 31.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.4e-71 273.9 682 33.7
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 4.4e-71 273.5 692 31.6
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.8e-71 273.1 692 31.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 7.6e-71 272.7 690 33.0
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.7e-70 271.6 683 32.1
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.4e-70 269.6 680 32.5
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.4e-70 269.2 680 32.1
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 8.4e-70 269.2 679 32.5
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.1e-69 268.9 678 32.3
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.1e-69 268.9 680 32.5
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.4e-69 268.5 634 32.5
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.4e-69 267.7 683 32.1
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-69 267.3 716 31.3
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 7.1e-69 266.2 683 31.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 7.1e-69 266.2 382 42.9
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.1e-69 266.2 698 30.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.2e-68 265.4 677 32.1
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.6e-68 265.0 684 31.1
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.6e-68 265.0 681 32.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.5e-68 263.8 663 31.2
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 7.8e-68 262.7 686 31.5
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.0e-67 262.3 682 32.7
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-67 261.9 680 31.9
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.0e-67 260.8 681 31.1
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 3.0e-67 260.8 382 42.7
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.9e-67 260.4 679 31.7
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 5.1e-67 260.0 683 30.3
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-66 258.8 359 41.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-66 257.7 703 30.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.3e-66 257.3 680 31.8
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.6e-65 255.0 385 42.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.1e-65 254.6 557 34.1
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.8e-65 254.2 706 30.2
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 3.6e-65 253.8 679 32.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 4.8e-65 253.4 388 41.2
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 2.4e-64 251.1 384 39.8
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 3.1e-64 250.8 379 42.2
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.3e-64 250.0 642 30.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.5e-63 248.4 721 30.7
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.6e-63 247.7 678 29.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.5e-63 246.9 663 31.4
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.8e-63 246.5 682 31.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 5.8e-63 246.5 379 42.0
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 5.8e-63 246.5 687 32.0
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.7e-62 245.0 389 39.3
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-62 244.6 382 41.1
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.2e-62 244.6 678 30.5
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 4.2e-61 240.4 690 29.6
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.2e-61 240.4 382 40.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 4.6e-60 236.9 391 40.9
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.8e-59 235.0 679 29.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.8e-59 235.0 691 30.4
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.3e-59 234.6 740 29.9
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 5.1e-59 233.4 352 40.9
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.1e-58 232.3 689 30.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.1e-58 232.3 721 31.5
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.5e-58 231.9 392 39.8
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.9e-58 231.5 689 30.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.9e-58 231.5 688 30.4
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.5e-58 231.1 689 30.3
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 7.4e-58 229.6 688 30.5
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 7.4e-58 229.6 389 39.6
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-57 228.4 390 39.5
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.1e-57 228.0 559 31.8
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.2e-57 226.5 379 38.5
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.4e-56 225.3 681 28.6
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 9.9e-55 219.2 639 30.0
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.7e-54 218.4 680 29.1
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 6.4e-54 216.5 639 29.9
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.2e-53 213.8 565 32.0
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.7e-52 211.1 690 28.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.0e-52 209.9 686 28.9
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.3e-51 208.0 282 45.0
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 5.1e-51 206.8 678 28.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.7e-51 206.1 356 39.3
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.3e-50 204.1 297 42.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.6e-50 203.4 693 28.9
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.1e-48 197.6 664 29.7
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.7e-46 191.8 388 36.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 1.4e-45 188.7 390 35.1
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.9e-45 188.3 390 35.1
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 7.1e-45 186.4 343 36.7
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.8e-41 174.5 387 33.9
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.4e-40 171.4 343 35.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 7.6e-39 166.4 265 40.0
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.0e-38 166.0 198 49.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.1e-37 162.5 384 31.2
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.5e-37 161.4 263 38.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-30 139.0 509 27.7
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.1e-28 131.7 161 50.9
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 5.7e-26 123.6 153 51.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.7e-25 120.9 148 48.6
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 2.9e-22 111.3 312 30.1
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 2.5e-21 108.2 158 38.6
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-21 108.2 101 59.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.0e-19 102.8 401 25.2
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.4e-18 97.4 529 24.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-16 91.3 161 41.0
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.1e-12 77.0 179 30.7
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-10 72.4 110 40.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 3.7e-09 67.8 80 45.0
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.1e-08 63.2 126 34.1
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.5e-07 60.8 155 33.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.9e-06 58.2 60 45.0
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 8.5e-06 56.6 132 26.5


User provided reference genes

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