Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07950 Sequoiadendron giganteum HOM05D002996 ORTHO05D021455 2.8e-58 228.4 117 100.0
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 5.2e-20 101.3 69 71.0
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 2.0e-19 99.4 69 69.6
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.0e-19 99.4 69 72.5
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.6e-19 99.0 69 69.6
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 5.8e-19 97.8 69 68.1
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 5.8e-19 97.8 58 77.6
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 7.5e-19 97.4 69 68.1
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 7.5e-19 97.4 69 68.1
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 9.8e-19 97.1 69 66.7
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 9.8e-19 97.1 69 69.6
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 1.3e-18 96.7 57 78.9
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.3e-18 96.7 69 68.1
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 1.7e-18 96.3 69 66.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.7e-18 96.3 69 68.1
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.7e-18 96.3 69 68.1
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.2e-18 95.9 67 65.7
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 2.9e-18 95.5 69 65.2
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 2.9e-18 95.5 69 68.1
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.7e-18 95.1 69 66.7
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.7e-18 95.1 69 66.7
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 3.7e-18 95.1 69 66.7
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.7e-18 95.1 76 63.2
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 65.2
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 6.4e-18 94.4 69 66.7
Actinidia17658 Actinidia chinensis HOM05D002996 ORTHO05D003536 8.3e-18 94.0 69 66.7
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 8.3e-18 94.0 69 66.7
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 8.3e-18 94.0 69 65.2
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 8.3e-18 94.0 69 66.7
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 8.3e-18 94.0 69 66.7
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 8.3e-18 94.0 60 73.3
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-17 93.6 69 66.7
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.1e-17 93.6 69 68.1
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.1e-17 93.6 60 75.0
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 66.7
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 66.7
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.4e-17 93.2 69 65.2
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.9e-17 92.8 69 65.2
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.9e-17 92.8 69 65.2
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.9e-17 92.8 69 62.3
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 2.4e-17 92.4 69 65.2
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 2.4e-17 92.4 69 66.7
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 2.4e-17 92.4 60 71.7
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.4e-17 92.4 69 63.8
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.4e-17 92.4 57 75.4
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.4e-17 92.4 57 75.4
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.4e-17 92.4 69 65.2
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.2e-17 92.0 56 76.8
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 3.2e-17 92.0 69 66.7
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 3.2e-17 92.0 69 65.2
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 4.1e-17 91.7 69 65.2
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.1e-17 91.7 69 63.8
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 4.1e-17 91.7 69 65.2
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 4.1e-17 91.7 69 65.2
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 5.4e-17 91.3 60 71.7
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 5.4e-17 91.3 69 63.8
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 5.4e-17 91.3 69 65.2
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 5.4e-17 91.3 69 63.8
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 7.0e-17 90.9 69 65.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 7.0e-17 90.9 69 65.2
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 7.0e-17 90.9 69 63.8
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 9.2e-17 90.5 69 63.8
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 9.2e-17 90.5 69 63.8
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 9.2e-17 90.5 69 63.8
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.2e-16 90.1 69 63.8
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.2e-16 90.1 69 63.8
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.2e-16 90.1 69 63.8
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-16 90.1 69 63.8
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.6e-16 89.7 69 63.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.6e-16 89.7 69 63.8
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.1e-16 89.4 69 63.8
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 2.1e-16 89.4 69 62.3
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 2.1e-16 89.4 69 63.8
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.1e-16 89.4 69 65.2
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 2.7e-16 89.0 69 63.8
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.5e-16 88.6 69 62.3
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 3.5e-16 88.6 69 63.8
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.5e-16 88.6 57 70.2
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 4.6e-16 88.2 69 60.9
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 4.6e-16 88.2 69 62.3
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 4.6e-16 88.2 60 68.3
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 4.6e-16 88.2 57 71.9
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 6.0e-16 87.8 69 62.3
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 6.0e-16 87.8 60 68.3
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 6.0e-16 87.8 69 60.9
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 6.0e-16 87.8 69 62.3
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.0e-16 87.8 69 62.3
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 6.0e-16 87.8 69 62.3
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 7.8e-16 87.4 57 70.2
vmacro05506 Vaccinium macrocarpon HOM05D002996 ORTHO05D021455 7.8e-16 87.4 62 67.7
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 7.8e-16 87.4 69 60.9
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.0e-15 87.0 69 62.3
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.3e-15 86.7 69 60.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.7e-15 86.3 67 62.7
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 71.9
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 70.2
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 71.9
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 71.9
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 71.9
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.3e-15 85.9 57 71.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 3.0e-15 85.5 57 70.2
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 3.0e-15 85.5 57 70.2
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 3.0e-15 85.5 57 70.2
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 3.0e-15 85.5 57 70.2
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.0e-15 85.5 57 70.2
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.9e-15 85.1 60 63.3
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 3.9e-15 85.1 69 63.8
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 5.1e-15 84.7 57 70.2
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 5.1e-15 84.7 57 70.2
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 5.1e-15 84.7 57 70.2
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 5.1e-15 84.7 57 70.2
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 5.1e-15 84.7 69 58.0
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 5.1e-15 84.7 67 62.7
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 6.6e-15 84.3 57 70.2
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 6.6e-15 84.3 57 68.4
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 6.6e-15 84.3 57 68.4
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 6.6e-15 84.3 69 60.9
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 6.6e-15 84.3 69 62.3
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 8.6e-15 84.0 69 58.0
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 8.6e-15 84.0 69 59.4
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 1.1e-14 83.6 57 68.4
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.5e-14 83.2 57 66.7
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.9e-14 82.8 69 60.9
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 3.3e-14 82.0 69 55.1
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 3.3e-14 82.0 69 58.0
vmacro05510 Vaccinium macrocarpon HOM05D002996 ORTHO05D021455 3.3e-14 82.0 53 71.7
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 1.2e-11 73.6 52 67.3
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.3e-10 70.1 57 59.6
AT3G03370 Arabidopsis thaliana HOM05D002996 ORTHO05D021455 3.0e-07 58.9 44 61.4


User provided reference genes

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