Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06654 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 8.6e-287 989.6 479 100.0
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 6.6e-45 186.0 370 31.9
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 2.5e-44 184.1 360 32.5
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 9.8e-41 172.2 548 27.9
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 1.6e-38 164.9 349 31.8
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 2.7e-38 164.1 525 26.1
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 1.0e-37 162.2 522 26.6
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 1.1e-36 158.7 354 30.5
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 3.3e-36 157.1 339 29.2
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 5.6e-36 156.4 344 29.7
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 5.6e-36 156.4 348 29.9
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 5.6e-36 156.4 347 28.8
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 9.5e-36 155.6 345 28.7
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 1.2e-35 155.2 355 29.9
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 4.7e-35 153.3 438 27.9
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 6.2e-35 152.9 350 28.9
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 8.1e-35 152.5 342 28.9
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 8.1e-35 152.5 353 29.5
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 1.4e-34 151.8 339 29.8
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.8e-34 151.4 347 30.5
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 2.3e-34 151.0 339 29.8
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 3.1e-34 150.6 351 29.3
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 3.1e-34 150.6 330 30.3
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 4.0e-34 150.2 339 29.8
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 4.0e-34 150.2 329 28.9
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 4.0e-34 150.2 383 31.3
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 6.8e-34 149.4 340 28.8
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 2.0e-33 147.9 329 29.2
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 2.0e-33 147.9 339 28.9
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 2.0e-33 147.9 344 28.8
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 2.6e-33 147.5 344 28.8
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 3.4e-33 147.1 331 29.3
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 3.4e-33 147.1 333 30.0
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 4.4e-33 146.7 344 27.9
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 4.4e-33 146.7 352 29.3
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 5.8e-33 146.4 356 28.7
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 5.8e-33 146.4 341 29.6
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 7.6e-33 146.0 342 28.9
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 9.9e-33 145.6 348 30.2
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 9.9e-33 145.6 348 30.2
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 1.7e-32 144.8 355 30.7
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 1.7e-32 144.8 340 29.1
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 1.7e-32 144.8 356 29.5
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 2.2e-32 144.4 330 29.1
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 2.2e-32 144.4 346 28.0
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 2.2e-32 144.4 339 28.9
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 2.2e-32 144.4 543 26.7
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 2.9e-32 144.1 346 27.5
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.9e-32 144.1 339 28.6
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 2.9e-32 144.1 538 25.1
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 2.9e-32 144.1 356 28.4
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 3.8e-32 143.7 339 28.6
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 4.9e-32 143.3 341 28.4
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 4.9e-32 143.3 337 30.9
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 4.9e-32 143.3 346 27.7
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 6.4e-32 142.9 333 29.7
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 6.4e-32 142.9 350 28.0
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 8.4e-32 142.5 338 28.7
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 8.4e-32 142.5 354 28.2
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 8.4e-32 142.5 337 30.9
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 8.4e-32 142.5 344 28.5
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.1e-31 142.1 340 28.8
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 1.4e-31 141.7 349 27.2
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 1.9e-31 141.4 348 28.7
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 1.9e-31 141.4 350 29.1
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 1.9e-31 141.4 341 27.9
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.9e-31 141.4 344 27.6
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 2.4e-31 141.0 340 28.8
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 3.2e-31 140.6 348 27.3
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 4.1e-31 140.2 335 27.8
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 4.1e-31 140.2 343 27.7
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 5.4e-31 139.8 339 28.0
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 5.4e-31 139.8 340 29.1
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 5.4e-31 139.8 338 30.8
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 7.1e-31 139.4 340 27.9
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 7.1e-31 139.4 350 27.4
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 7.1e-31 139.4 314 28.7
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 7.1e-31 139.4 362 30.1
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 2.7e-30 137.5 338 25.7
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 2.7e-30 137.5 355 29.6
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 6.0e-30 136.3 339 28.3
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 1.0e-29 135.6 339 27.4
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 1.0e-29 135.6 339 27.4
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.0e-29 135.6 386 30.6
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.3e-29 135.2 377 28.1
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 2.3e-29 134.4 342 29.8
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 3.0e-29 134.0 340 27.6
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 3.0e-29 134.0 342 27.2
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 6.6e-29 132.9 320 30.6
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 8.6e-29 132.5 341 30.5
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 8.6e-29 132.5 349 28.7
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 8.6e-29 132.5 354 26.6
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 5.6e-28 129.8 428 27.3
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 8.1e-27 125.9 346 27.7
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 4.0e-26 123.6 362 28.5
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 1.2e-25 122.1 351 27.9
Mapoly0121s0043 Marchantia polymorpha HOM05D004028 ORTHO05D004844 9.9e-25 119.0 334 29.9
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 2.2e-24 117.9 337 27.9
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 8.4e-24 115.9 218 31.2
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.4e-23 115.2 330 28.8
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 1.9e-23 114.8 292 27.4
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 9.3e-23 112.5 331 28.7
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.2e-22 112.1 393 26.7
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 6.0e-22 109.8 327 26.9
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.3e-21 108.6 315 27.3
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 1.7e-21 108.2 338 27.5
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 3.9e-21 107.1 324 27.2
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 5.1e-21 106.7 279 29.4
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.3e-19 102.1 316 26.3
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 1.6e-19 101.7 320 26.2
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 2.8e-19 100.9 250 27.2
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 1.3e-16 92.0 352 26.4
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.9e-16 90.9 233 27.0
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 8.4e-16 89.4 338 25.7
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 1.1e-15 89.0 318 25.5
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 2.4e-15 87.8 317 25.9
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 9.3e-15 85.9 345 24.3
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 3.9e-13 80.5 323 25.1
SMO180G0024 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 3.9e-13 80.5 287 25.4
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 5.1e-13 80.1 227 26.4
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 5.1e-13 80.1 333 23.4
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 6.7e-13 79.7 338 24.3
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 6.7e-13 79.7 331 23.6
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 6.7e-13 79.7 324 26.5
SMO340G0015 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 6.7e-13 79.7 293 25.3
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 8.7e-13 79.3 307 25.7
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 1.9e-12 78.2 283 26.1
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.9e-12 78.2 321 24.6
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.5e-12 77.8 345 23.5
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.3e-11 75.5 320 25.0
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 2.8e-11 74.3 321 24.3
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 2.8e-11 74.3 360 25.6
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 2.8e-11 74.3 335 24.5
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 4.8e-11 73.6 160 31.2
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 6.2e-11 73.2 151 27.8
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.6e-09 67.8 332 22.9
Lsat_1_v5_gn_1_33920 Lactuca sativa HOM05D004028 ORTHO05D004844 5.8e-09 66.6 112 31.2
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.7e-08 65.1 341 24.3
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 6.4e-08 63.2 315 24.1


User provided reference genes

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