Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06404 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 2.0e-71 272.3 135 100.0
SEGI_08917 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 2.0e-71 272.3 135 100.0
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 3.0e-27 125.6 111 56.8
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 3.9e-27 125.2 102 58.8
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 5.1e-27 124.8 118 53.4
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 8.7e-27 124.0 103 60.2
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 8.7e-27 124.0 108 55.6
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.5e-26 123.2 121 52.1
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.5e-26 123.2 121 52.1
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 1.9e-26 122.9 118 51.7
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.9e-26 122.9 118 55.1
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 1.9e-26 122.9 118 52.5
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 2.5e-26 122.5 118 50.0
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 2.5e-26 122.5 103 57.3
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 3.3e-26 122.1 118 51.7
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 4.3e-26 121.7 106 56.6
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 5.6e-26 121.3 103 59.2
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 5.6e-26 121.3 118 51.7
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 7.3e-26 120.9 108 56.5
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 7.3e-26 120.9 103 58.3
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 9.6e-26 120.6 103 58.3
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 9.6e-26 120.6 103 58.3
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 9.6e-26 120.6 118 54.2
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 1.3e-25 120.2 103 58.3
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 1.6e-25 119.8 109 56.0
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.6e-25 119.8 118 52.5
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.6e-25 119.8 118 54.2
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 1.6e-25 119.8 111 54.1
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 1.6e-25 119.8 118 50.8
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 1.6e-25 119.8 108 54.6
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 1.6e-25 119.8 103 57.3
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 1.6e-25 119.8 111 50.5
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 2.1e-25 119.4 118 48.3
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 2.1e-25 119.4 103 57.3
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 2.1e-25 119.4 102 55.9
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 2.1e-25 119.4 118 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 2.8e-25 119.0 103 56.3
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 2.8e-25 119.0 102 56.9
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.6e-25 118.6 118 50.8
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 3.6e-25 118.6 103 57.3
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 3.6e-25 118.6 118 50.8
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 3.6e-25 118.6 111 54.1
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 3.6e-25 118.6 103 56.3
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 4.8e-25 118.2 103 57.3
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 4.8e-25 118.2 118 52.5
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 4.8e-25 118.2 103 55.3
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 4.8e-25 118.2 103 56.3
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 4.8e-25 118.2 108 55.6
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 4.8e-25 118.2 103 56.3
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 6.2e-25 117.9 103 55.3
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 8.1e-25 117.5 118 52.5
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 8.1e-25 117.5 103 56.3
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 8.1e-25 117.5 108 54.6
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 49.2
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 48.3
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 48.3
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 49.2
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 50.8
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 51.7
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.1e-24 117.1 118 51.7
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 1.1e-24 117.1 102 57.8
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 1.4e-24 116.7 118 51.7
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 1.8e-24 116.3 118 49.2
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 2.4e-24 115.9 118 48.3
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.4e-24 115.9 103 55.3
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 2.4e-24 115.9 108 54.6
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 2.4e-24 115.9 118 50.8
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 3.1e-24 115.5 103 53.4
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 3.1e-24 115.5 103 54.4
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 4.0e-24 115.2 103 54.4
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 4.0e-24 115.2 103 54.4
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 4.0e-24 115.2 102 55.9
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 4.0e-24 115.2 108 52.8
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 4.0e-24 115.2 108 53.7
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 5.3e-24 114.8 118 46.6
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 5.3e-24 114.8 103 56.3
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 5.3e-24 114.8 103 55.3
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 5.3e-24 114.8 103 54.4
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 5.3e-24 114.8 103 54.4
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 9.0e-24 114.0 108 51.9
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 9.0e-24 114.0 102 52.9
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 9.0e-24 114.0 108 50.9
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 9.0e-24 114.0 108 51.9
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 9.0e-24 114.0 118 49.2
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 9.0e-24 114.0 118 49.2
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 9.0e-24 114.0 118 49.2
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 1.2e-23 113.6 103 55.3
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 1.2e-23 113.6 103 56.3
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-23 113.2 108 52.8
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-23 113.2 108 52.8
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 1.5e-23 113.2 111 50.5
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.5e-23 113.2 118 50.8
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.5e-23 113.2 103 53.4
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 2.0e-23 112.8 103 55.3
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 3.4e-23 112.1 103 54.4
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 4.5e-23 111.7 102 53.9
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 5.8e-23 111.3 106 51.9
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 7.6e-23 110.9 103 53.4
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 7.6e-23 110.9 108 52.8
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 9.9e-23 110.5 115 49.6
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 9.9e-23 110.5 115 49.6
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 9.9e-23 110.5 108 51.9
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 9.9e-23 110.5 108 51.9
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 1.7e-22 109.8 108 51.9
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 1.7e-22 109.8 111 47.7
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 1.7e-22 109.8 108 51.9
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 1.7e-22 109.8 107 49.5
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 2.9e-22 109.0 111 50.5
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 2.9e-22 109.0 121 46.3
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 2.9e-22 109.0 103 53.4
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 3.8e-22 108.6 108 50.9
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 3.8e-22 108.6 108 50.9
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 3.8e-22 108.6 108 51.9
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 4.9e-22 108.2 112 50.0
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 4.9e-22 108.2 112 50.0
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 6.4e-22 107.8 118 47.5
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 8.4e-22 107.5 108 50.9
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 8.4e-22 107.5 108 51.9
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.1e-21 107.1 103 52.4
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 1.4e-21 106.7 101 54.5
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 1.9e-21 106.3 110 49.1
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 2.4e-21 105.9 112 49.1
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 2.4e-21 105.9 108 48.1
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 3.2e-21 105.5 112 49.1
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 3.2e-21 105.5 112 49.1
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 3.2e-21 105.5 118 46.6
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 7.1e-21 104.4 111 45.9
TPR.G33741 Trifolium pratense HOM05D000141 ORTHO05D004489 7.1e-21 104.4 103 52.4
Nitab4.5_0000973g0040 Nicotiana tabacum HOM05D000141 ORTHO05D004489 1.6e-20 103.2 74 66.2
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.0e-19 100.5 150 38.0
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.0e-19 100.5 120 45.0
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 1.3e-19 100.1 115 47.8
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 3.0e-19 99.0 102 48.0
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 8.7e-19 97.4 104 48.1
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 8.1e-17 90.9 115 44.3
MCO02G386 Micromonas commoda HOM05D000141 ORTHO05D004489 8.1e-17 90.9 98 46.9
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 1.5e-15 86.7 102 41.2
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 2.2e-14 82.8 81 50.6
CDE02G4290 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 3.8e-14 82.0 103 42.7
SHI32496 Sapria himalayana HOM05D000141 ORTHO05D004489 4.6e-12 75.1 86 44.2
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 1.8e-11 73.2 82 45.1
MBI05_g40559_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.5e-10 70.1 98 37.8
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 5.6e-10 68.2 118 33.9
Hma1.2p1_0490F.1_g164200 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 5.6e-10 68.2 89 41.6
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 9.6e-10 67.4 118 33.9
Nitab4.5_0017516g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 2.1e-09 66.2 66 47.0
Nitab4.5_0028853g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 2.1e-09 66.2 66 47.0


User provided reference genes

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