Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02491 Sequoiadendron giganteum HOM05D004443 ORTHO05D005421 0.0e+00 1644.0 858 100.0
Ciclev10000257m.g Citrus clementina HOM05D004443 ORTHO05D005421 1.8e-64 251.9 181 67.4
Manes.02G160000 Manihot esculenta HOM05D004443 ORTHO05D005421 3.0e-64 251.1 179 68.2
Solyc11g013240.3 Solanum lycopersicum HOM05D004443 ORTHO05D005421 6.7e-64 250.0 178 68.5
Glyma.14G164400 Glycine max HOM05D004443 ORTHO05D005421 1.1e-63 249.2 187 66.3
arahy.Tifrunner.gnm1.ann1.ZN5JRL Arachis hypogaea HOM05D004443 ORTHO05D005421 5.6e-63 246.9 197 64.5
Gohir.D05G234800 Gossypium hirsutum HOM05D004443 ORTHO05D005421 5.6e-63 246.9 265 50.9
Sed0020608 Sechium edule HOM05D004443 ORTHO05D005421 5.6e-63 246.9 168 70.2
CSS0010818 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 7.4e-63 246.5 207 60.9
Gohir.A05G232400 Gossypium hirsutum HOM05D004443 ORTHO05D005421 9.6e-63 246.1 249 52.2
Cc10_g10510 Coffea canephora HOM05D004443 ORTHO05D005421 1.3e-62 245.7 206 60.7
CSS0038352 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 1.6e-62 245.4 207 60.4
CAN.G392.3 Capsicum annuum HOM05D004443 ORTHO05D005421 2.1e-62 245.0 179 65.9
ClCG03G009370 Citrullus lanatus HOM05D004443 ORTHO05D005421 2.1e-62 245.0 194 62.9
Sopen11g008260 Solanum pennellii HOM05D004443 ORTHO05D005421 2.1e-62 245.0 254 52.8
Peaxi162Scf00339g00047 Petunia axillaris HOM05D004443 ORTHO05D005421 2.8e-62 244.6 275 50.9
PGSC0003DMG401029032 Solanum tuberosum HOM05D004443 ORTHO05D005421 2.8e-62 244.6 254 52.8
Ca_15215_v3 Cicer arietinum L. HOM05D004443 ORTHO05D005421 3.7e-62 244.2 199 61.3
Lj4A595G17 Lonicera japonica HOM05D004443 ORTHO05D005421 6.2e-62 243.4 180 65.0
Lj4A601G4 Lonicera japonica HOM05D004443 ORTHO05D005421 6.2e-62 243.4 180 65.0
TPR.G22340 Trifolium pratense HOM05D004443 ORTHO05D005421 8.1e-62 243.0 195 61.0
Glyma.13G083100 Glycine max HOM05D004443 ORTHO05D005421 1.1e-61 242.7 187 64.2
Oeu030035.2 Olea europaea HOM05D004443 ORTHO05D005421 1.1e-61 242.7 204 59.8
MD15G1356500 Malus domestica HOM05D004443 ORTHO05D005421 1.8e-61 241.9 327 46.5
Manes.18G073900 Manihot esculenta HOM05D004443 ORTHO05D005421 1.8e-61 241.9 203 61.6
MSTRG.1478 Avicennia marina HOM05D004443 ORTHO05D005421 2.4e-61 241.5 195 63.6
Sabra05G0130800 Salix brachista HOM05D004443 ORTHO05D005421 2.4e-61 241.5 177 67.8
ATR0684G022 Amborella trichopoda HOM05D004443 ORTHO05D005421 3.1e-61 241.1 579 37.1
Gohir.A06G041700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 3.1e-61 241.1 261 50.6
PGR042G3639 Punica granatum HOM05D004443 ORTHO05D005421 3.1e-61 241.1 190 62.6
Actinidia29443 Actinidia chinensis HOM05D004443 ORTHO05D005421 5.3e-61 240.4 179 64.2
Thecc.08G119500 Theobroma cacao HOM05D004443 ORTHO05D005421 5.3e-61 240.4 277 49.8
BraA07t31825Z Brassica rapa HOM05D004443 ORTHO05D005421 6.9e-61 240.0 289 48.8
Cpa.g.sc36.11 Carica papaya HOM05D004443 ORTHO05D005421 6.9e-61 240.0 166 67.5
QL09p036005 Quercus lobata HOM05D004443 ORTHO05D005421 6.9e-61 240.0 547 35.8
Gohir.D06G042700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 9.0e-61 239.6 276 48.2
Nitab4.5_0000494g0040 Nicotiana tabacum HOM05D004443 ORTHO05D005421 9.0e-61 239.6 262 50.8
Prupe.1G503700 Prunus persica HOM05D004443 ORTHO05D005421 9.0e-61 239.6 314 47.5
Glyma.04G252700 Glycine max HOM05D004443 ORTHO05D005421 1.2e-60 239.2 249 52.6
vmacro12543 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 1.2e-60 239.2 152 72.4
GSVIVG01008926001 Vitis vinifera HOM05D004443 ORTHO05D005421 1.2e-60 239.2 177 64.4
Lalb_Chr23g0270831 Lupinus albus HOM05D004443 ORTHO05D005421 2.0e-60 238.4 252 52.4
Nitab4.5_0000193g0100 Nicotiana tabacum HOM05D004443 ORTHO05D005421 2.0e-60 238.4 262 50.8
RcHm_v2.0_Chr6g0294911 Rosa chinensis HOM05D004443 ORTHO05D005421 2.0e-60 238.4 323 46.7
FAN27G0670 Fragaria x ananassa HOM05D004443 ORTHO05D005421 2.6e-60 238.0 368 41.3
Gorai.010G047900 Gossypium raimondii HOM05D004443 ORTHO05D005421 2.6e-60 238.0 276 47.8
HanXRQChr04g0111641 Helianthus annuus HOM05D004443 ORTHO05D005421 2.6e-60 238.0 189 61.4
CiPaw.05G227100 Carya illinoinensis HOM05D004443 ORTHO05D005421 3.4e-60 237.7 469 39.0
Dinv07918 Davidia involucrata HOM05D004443 ORTHO05D005421 3.4e-60 237.7 291 48.5
AT1G77720 Arabidopsis thaliana HOM05D004443 ORTHO05D005421 4.5e-60 237.3 152 72.4
Lj1g0001137 Lotus japonicus HOM05D004443 ORTHO05D005421 4.5e-60 237.3 265 49.4
Hund27045 Selenicereus undatus HOM05D004443 ORTHO05D005421 4.5e-60 237.3 177 65.5
Atru.chr13.1339 Acer truncatum HOM05D004443 ORTHO05D005421 5.8e-60 236.9 481 37.0
Atru.chr13.1382 Acer truncatum HOM05D004443 ORTHO05D005421 5.8e-60 236.9 481 37.0
FAN20G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 5.8e-60 236.9 316 46.2
BcaC08g45457 Brassica carinata HOM05D004443 ORTHO05D005421 7.6e-60 236.5 310 47.1
A07p43040 Brassica napus HOM05D004443 ORTHO05D005421 7.6e-60 236.5 349 41.8
C06p30850 Brassica napus HOM05D004443 ORTHO05D005421 7.6e-60 236.5 310 47.1
BolC6t38247H Brassica oleracea HOM05D004443 ORTHO05D005421 7.6e-60 236.5 310 47.1
DCAR_002660 Daucus carota HOM05D004443 ORTHO05D005421 7.6e-60 236.5 204 58.3
FvH4_2g26330 Fragaria vesca HOM05D004443 ORTHO05D005421 7.6e-60 236.5 319 46.1
THA.LOC104813647 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 7.6e-60 236.5 199 57.3
CARHR071230 Cardamine hirsuta HOM05D004443 ORTHO05D005421 9.9e-60 236.1 180 61.7
Rhsim06G0108200 Rhododendron simsii HOM05D004443 ORTHO05D005421 9.9e-60 236.1 176 63.6
Nn5g28118 Nelumbo nucifera HOM05D004443 ORTHO05D005421 1.3e-59 235.7 484 39.5
SalBow7G4055 Salvia bowleyana HOM05D004443 ORTHO05D005421 1.3e-59 235.7 460 39.1
AUR62023626 Chenopodium quinoa HOM05D004443 ORTHO05D005421 1.7e-59 235.3 247 52.2
AL2G37950 Arabidopsis lyrata HOM05D004443 ORTHO05D005421 2.2e-59 235.0 166 65.7
A07p27860 Brassica napus HOM05D004443 ORTHO05D005421 2.2e-59 235.0 310 46.8
BraA07t30425Z Brassica rapa HOM05D004443 ORTHO05D005421 2.2e-59 235.0 310 46.8
CDE05G2151 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 2.2e-59 235.0 253 54.5
THA.LOC104800183 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 2.2e-59 235.0 355 42.5
Oeu047924.1 Olea europaea HOM05D004443 ORTHO05D005421 2.9e-59 234.6 331 43.8
Lsat_1_v5_gn_1_8300 Lactuca sativa HOM05D004443 ORTHO05D005421 3.8e-59 234.2 170 64.1
SalBow7G0080 Salvia bowleyana HOM05D004443 ORTHO05D005421 3.8e-59 234.2 460 39.1
SGA_v2.0_scaffold24G10494 Striga asiatica HOM05D004443 ORTHO05D005421 3.8e-59 234.2 358 41.9
FAN15G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 4.9e-59 233.8 317 44.5
Migut.N03312 Erythranthe guttata HOM05D004443 ORTHO05D005421 8.4e-59 233.0 198 59.6
Gorai.009G243100 Gossypium raimondii HOM05D004443 ORTHO05D005421 8.4e-59 233.0 514 37.4
MBI03_g28297_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 1.1e-58 232.6 281 49.1
Psat5g133680 Pisum sativum HOM05D004443 ORTHO05D005421 1.1e-58 232.6 160 66.9
TAR628G1041 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.4e-58 232.3 202 58.9
Medtr3g072990 Medicago truncatula HOM05D004443 ORTHO05D005421 1.9e-58 231.9 263 51.0
CANSAT64G0744 Cannabis sativa HOM05D004443 ORTHO05D005421 2.4e-58 231.5 347 45.0
CsaV3_5G023250 Cucumis sativus L. HOM05D004443 ORTHO05D005421 2.4e-58 231.5 301 46.8
Dinv27370 Davidia involucrata HOM05D004443 ORTHO05D005421 2.4e-58 231.5 304 45.7
AUR62004709 Chenopodium quinoa HOM05D004443 ORTHO05D005421 4.2e-58 230.7 254 50.0
Aa31LG7G5960 Aethionema arabicum HOM05D004443 ORTHO05D005421 7.1e-58 229.9 322 42.9
HPP92_004123 Vanilla planifolia HOM05D004443 ORTHO05D005421 7.1e-58 229.9 182 62.1
arahy.Tifrunner.gnm1.ann1.BQZ9WD Arachis hypogaea HOM05D004443 ORTHO05D005421 9.3e-58 229.6 500 37.0
ECA246G2537 Erigeron canadensis HOM05D004443 ORTHO05D005421 9.3e-58 229.6 160 65.6
Potri.002G087600 Populus trichocarpa HOM05D004443 ORTHO05D005421 9.3e-58 229.6 300 47.7
Eucgr.F03751 Eucalyptus grandis HOM05D004443 ORTHO05D005421 1.2e-57 229.2 490 37.6
Sabra02G0069100 Salix brachista HOM05D004443 ORTHO05D005421 1.2e-57 229.2 565 34.3
TPR.G8515 Trifolium pratense HOM05D004443 ORTHO05D005421 1.2e-57 229.2 330 42.1
FAN24G3433 Fragaria x ananassa HOM05D004443 ORTHO05D005421 1.6e-57 228.8 337 43.9
Medtr5g059280 Medicago truncatula HOM05D004443 ORTHO05D005421 1.6e-57 228.8 331 43.5
TAR376G1068 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.6e-57 228.8 279 49.5
MELO3C003047.2 Cucumis melo HOM05D004443 ORTHO05D005421 2.1e-57 228.4 147 72.1
Migut.C01174 Erythranthe guttata HOM05D004443 ORTHO05D005421 2.7e-57 228.0 291 49.1
PSO170G3840 Papaver somniferum HOM05D004443 ORTHO05D005421 2.7e-57 228.0 190 59.5
MBI06_g01059_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 3.5e-57 227.6 289 49.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 4.6e-57 227.3 210 58.1
CDE11G0263 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 6.0e-57 226.9 296 47.3
Potri.005G173300 Populus trichocarpa HOM05D004443 ORTHO05D005421 6.0e-57 226.9 293 47.4
TWI56G1242 Tripterygium wilfordii HOM05D004443 ORTHO05D005421 7.9e-57 226.5 293 46.4
Thhalv10018161m.g Eutrema salsugineum HOM05D004443 ORTHO05D005421 1.3e-56 225.7 310 43.9
BcaB02g07128 Brassica carinata HOM05D004443 ORTHO05D005421 1.8e-56 225.3 316 44.6
Glyma.06G109800 Glycine max HOM05D004443 ORTHO05D005421 2.3e-56 224.9 320 45.6
Sc01g0001440 Simmondsia chinensis HOM05D004443 ORTHO05D005421 3.9e-56 224.2 330 43.3
Sp5g32890 Schrenkiella parvula HOM05D004443 ORTHO05D005421 5.1e-56 223.8 288 45.5
Cfa015975 Carpinus fangiana HOM05D004443 ORTHO05D005421 8.7e-56 223.0 367 41.4
Lsat_1_v5_gn_6_112781 Lactuca sativa HOM05D004443 ORTHO05D005421 1.9e-55 221.9 140 72.9
Phvul.009G121600 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 3.3e-55 221.1 333 42.9
unitig_0.g2123 Utricularia gibba HOM05D004443 ORTHO05D005421 5.6e-55 220.3 339 43.1
unitig_747.g21486 Utricularia gibba HOM05D004443 ORTHO05D005421 5.6e-55 220.3 331 46.8
Lalb_Chr08g0241621 Lupinus albus HOM05D004443 ORTHO05D005421 7.4e-55 219.9 336 42.0
HanXRQChr05g0151061 Helianthus annuus HOM05D004443 ORTHO05D005421 1.3e-54 219.2 307 44.3
Aqoxy5G02432 Aquilegia oxysepala HOM05D004443 ORTHO05D005421 1.6e-54 218.8 471 35.2
EL10Ac1g00020 Beta vulgaris HOM05D004443 ORTHO05D005421 2.1e-54 218.4 322 42.9
Carub.0002s2461 Capsella rubella HOM05D004443 ORTHO05D005421 6.2e-54 216.9 442 35.7
VMungo1309G0089 Vigna mungo HOM05D004443 ORTHO05D005421 1.8e-53 215.3 505 34.3
CSS0006777 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 3.1e-53 214.5 307 44.6
PSO017G0128 Papaver somniferum HOM05D004443 ORTHO05D005421 4.0e-53 214.2 215 52.6
Ah.05g172330 Amaranthus hybridus HOM05D004443 ORTHO05D005421 6.9e-53 213.4 289 45.3
CSS0010068 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 9.0e-53 213.0 280 45.4
Os03g0704400 Oryza sativa ssp. japonica HOM05D004443 ORTHO05D005421 9.0e-53 213.0 282 46.8
Psat2g079080 Pisum sativum HOM05D004443 ORTHO05D005421 9.0e-53 213.0 324 41.4
COL.COLO4_38348 Corchorus olitorius HOM05D004443 ORTHO05D005421 1.2e-52 212.6 537 35.2
SGA_v2.0_scaffold52G19007 Striga asiatica HOM05D004443 ORTHO05D005421 1.7e-51 208.8 395 38.5
C06p51690 Brassica napus HOM05D004443 ORTHO05D005421 1.6e-46 192.2 124 72.6
SMO367G0158 Selaginella moellendorffii HOM05D004443 ORTHO05D005421 7.9e-41 173.3 167 56.9
AagrBONN_evm.TU.Sc2ySwM_117.523 Anthoceros agrestis HOM05D004443 ORTHO05D005421 2.5e-39 168.3 181 53.0
Pp3c16_20900 Physcomitrium patens HOM05D004443 ORTHO05D005421 2.2e-38 165.2 148 60.1
Haze_00499 Corylus avellana HOM05D004443 ORTHO05D005421 6.3e-38 163.7 333 36.3
Mapoly0042s0023 Marchantia polymorpha HOM05D004443 ORTHO05D005421 2.2e-35 155.2 267 38.6
BcaB03g15927 Brassica carinata HOM05D004443 ORTHO05D005421 1.4e-34 152.5 322 37.6
Phvul.008G166700 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 7.2e-34 150.2 128 61.7
Zm00001eb054400 Zea mays HOM05D004443 ORTHO05D005421 6.7e-32 143.7 92 73.9
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 1.2e-28 132.9 264 37.1
Pp3c6_320 Physcomitrium patens HOM05D004443 ORTHO05D005421 3.5e-28 131.3 700 28.1
vmacro12536 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 1.8e-21 109.0 152 41.4
CBR_g31292 Chara braunii HOM05D001539 ORTHO05D000937 5.9e-20 104.0 143 40.6
SEGI_28555 Sequoiadendron giganteum HOM05D001723 ORTHO05D001706 2.7e-17 95.1 91 53.8
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 2.7e-17 95.1 69 60.9
Thecc.08G119100 Theobroma cacao HOM05D004443 ORTHO05D005421 1.0e-16 93.2 90 57.8
Cre07.g341700 Chlamydomonas reinhardtii HOM05D004443 ORTHO05D005421 8.8e-16 90.1 164 36.0
MCO15G651 Micromonas commoda HOM05D004443 ORTHO05D005421 2.6e-15 88.6 167 35.3
PRCOL_00006669 Prasinoderma coloniale HOM05D004443 ORTHO05D005421 6.3e-14 84.0 111 44.1
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.8e-13 82.4 65 63.1
SEGI_36268 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 2.9e-11 75.1 82 51.2
SEGI_00589 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 1.4e-08 66.2 59 59.3


User provided reference genes

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