Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 0.0e+00 1336.2 728 100.0
SEGI_31308 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 5.3e-70 270.0 147 100.0
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.4e-56 223.0 610 33.4
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.4e-53 214.2 521 33.4
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 8.5e-52 209.5 507 34.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 3.2e-51 207.6 535 34.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.5e-51 206.8 499 34.5
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 7.2e-51 206.5 499 34.5
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.1e-50 204.9 527 32.4
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 3.0e-49 201.1 493 32.7
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 8.8e-49 199.5 518 33.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-47 195.7 501 34.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-47 195.7 501 34.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.7e-47 195.3 497 33.8
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.8e-47 194.5 508 31.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 2.8e-47 194.5 479 33.4
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.7e-47 194.1 468 34.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 8.2e-47 193.0 498 33.3
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.2e-47 193.0 509 33.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.1e-46 192.6 486 32.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-46 192.6 495 33.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.1e-46 192.6 518 31.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.1e-46 191.0 496 33.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.1e-46 191.0 509 33.6
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.1e-46 191.0 499 33.1
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.6e-45 188.0 610 31.8
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 3.4e-45 187.6 517 32.3
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 3.4e-45 187.6 499 33.9
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.9e-45 186.8 366 38.0
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.0e-44 186.0 478 33.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.0e-44 186.0 513 32.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.3e-44 185.7 476 34.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.9e-44 184.5 510 32.7
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 3.8e-44 184.1 564 29.6
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.8e-44 184.1 558 32.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 6.5e-44 183.3 486 32.5
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.1e-43 182.6 473 34.0
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.4e-43 182.2 435 34.0
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.5e-43 181.4 487 32.6
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 2.5e-43 181.4 435 33.6
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.2e-43 181.0 449 33.9
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.2e-43 181.0 489 33.1
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.2e-43 181.0 496 33.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.2e-43 180.6 472 32.8
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 5.5e-43 180.3 454 34.1
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.7e-42 177.9 518 32.4
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 6.1e-42 176.8 467 33.2
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 6.1e-42 176.8 526 31.2
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.4e-41 175.6 542 31.7
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.8e-41 175.3 558 29.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.0e-41 174.5 494 32.2
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 5.1e-41 173.7 546 29.9
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 3.3e-40 171.0 453 32.9
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 9.7e-40 169.5 435 33.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.8e-39 167.9 449 32.1
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 3.7e-39 167.5 460 31.5
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.7e-39 167.5 505 31.5
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 3.7e-39 167.5 510 30.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.3e-39 166.8 487 31.4
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 6.3e-39 166.8 512 31.4
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.1e-38 166.0 515 30.7
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.4e-38 165.6 496 31.2
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 4.1e-38 164.1 558 31.0
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 5.3e-38 163.7 553 29.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 7.0e-38 163.3 507 31.8
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 9.1e-38 162.9 497 32.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.5e-37 162.2 490 31.4
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.0e-37 161.8 442 32.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.2e-36 158.3 499 30.7
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.2e-36 158.3 468 32.3
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 5.0e-36 157.1 449 31.2
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.1e-35 156.0 447 33.6
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.4e-35 155.6 467 32.1
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.4e-35 155.6 468 31.4
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.6e-34 152.1 514 28.6
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.7e-34 151.4 473 31.5
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 4.7e-34 150.6 441 30.6
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 4.7e-34 150.6 441 30.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-33 149.1 493 30.8
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.3e-32 144.4 533 29.1
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.3e-32 144.4 442 31.4
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 4.4e-32 144.1 421 29.9
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.3e-31 142.5 502 29.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 6.3e-31 140.2 439 29.6
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.0e-29 135.2 395 29.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.6e-29 134.8 505 30.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.7e-29 133.3 487 29.8
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 7.7e-29 133.3 431 31.1
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.5e-28 130.2 369 31.4
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.9e-27 128.6 298 35.2
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.9e-27 128.6 373 32.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.5e-27 127.1 493 28.6
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 9.4e-27 126.3 447 29.8
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.2e-26 125.9 501 30.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.1e-26 125.2 407 30.0
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-25 122.5 251 39.0
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 1.4e-25 122.5 448 28.8
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.8e-25 122.1 480 27.1
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.3e-25 121.7 327 33.3
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 2.0e-24 118.6 383 29.5
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 3.3e-24 117.9 460 28.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.7e-24 117.1 318 31.8
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.3e-23 115.9 447 26.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.8e-23 114.8 515 27.2
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.4e-22 112.5 487 25.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.4e-22 111.7 92 57.6
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 7.7e-21 106.7 358 31.8
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.3e-20 105.9 442 28.1
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.3e-20 105.9 262 32.4
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 3.8e-20 104.4 452 28.1
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 9.4e-19 99.8 276 32.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.7e-18 98.2 510 26.1
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.6e-18 97.8 296 30.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 6.1e-18 97.1 492 28.3
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 8.0e-18 96.7 502 23.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.0e-17 96.3 421 26.8
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.8e-17 95.5 445 28.1
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 2.3e-17 95.1 476 26.9
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-17 94.7 272 31.6
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 4.0e-17 94.4 399 28.6
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 5.2e-17 94.0 449 28.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.5e-16 92.4 482 26.1
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 7.5e-16 90.1 267 32.2
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 9.8e-16 89.7 498 26.7
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-15 89.4 397 28.2
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.7e-15 87.8 146 43.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 4.8e-15 87.4 393 26.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.8e-15 87.4 97 45.4
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.4e-14 85.9 397 28.0
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-14 85.5 397 27.7
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.8e-14 85.5 154 36.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.4e-14 85.1 352 25.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.6e-13 82.4 393 26.5
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.9e-13 80.5 216 32.4
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.0e-12 79.7 127 38.6
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.7e-12 79.0 123 43.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.1e-10 72.0 62 56.5
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 2.8e-10 71.6 445 25.4
Pp3c8_9500 Physcomitrium patens HOM05D019331 ORTHO05D026050 8.0e-10 70.1 409 23.2
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.2e-09 67.4 214 28.0
AagrBONN_evm.TU.Sc2ySwM_228.2778 Anthoceros agrestis HOM05D019331 ORTHO05D005785 2.6e-08 65.1 84 42.9
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.1e-06 57.8 87 31.0


User provided reference genes

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