Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.6e-91 338.2 165 100.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.9e-60 236.1 160 69.4
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.6e-59 233.0 157 71.3
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.8e-59 232.3 160 71.9
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.6e-59 231.9 157 70.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.8e-58 229.6 149 74.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.3e-58 229.2 159 69.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.0e-58 228.4 154 71.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.2e-58 228.0 160 70.6
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.8e-58 227.6 155 69.7
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.2e-57 226.9 153 70.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.6e-57 225.7 152 71.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.6e-57 225.7 160 68.1
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.4e-57 225.3 155 68.4
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.4e-57 225.3 155 68.4
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.4e-57 225.3 155 68.4
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.4e-57 225.3 153 68.6
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 3.4e-57 225.3 151 69.5
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 4.4e-57 224.9 155 69.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 4.4e-57 224.9 155 68.4
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.4e-57 224.9 154 70.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 4.4e-57 224.9 159 68.6
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 5.8e-57 224.6 151 70.2
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 5.8e-57 224.6 151 70.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.3e-56 223.4 151 70.2
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.2e-56 222.6 158 69.0
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 3.7e-56 221.9 153 69.9
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.7e-56 221.9 150 70.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.4e-55 219.2 171 63.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 3.2e-55 218.8 160 66.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 5.4e-55 218.0 176 61.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.2e-55 217.2 171 63.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 9.2e-55 217.2 155 67.7
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-54 216.9 167 65.3
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.7e-54 215.7 164 65.2
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.5e-54 215.3 151 67.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.8e-54 214.2 157 68.2
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 7.8e-54 214.2 178 60.1
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-53 213.0 161 65.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.0e-53 211.5 172 62.2
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 8.6e-53 210.7 180 59.4
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.3e-52 208.4 165 61.2
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.3e-52 207.6 164 64.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.3e-52 207.6 158 66.5
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 9.5e-52 207.2 162 64.2
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.6e-51 205.3 162 62.3
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.1e-50 203.8 156 65.4
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-50 202.6 163 62.0
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.3e-50 202.6 169 60.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.1e-50 202.2 175 58.9
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.1e-50 202.2 174 59.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 4.0e-50 201.8 167 62.3
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 4.0e-50 201.8 151 68.2
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 6.8e-50 201.1 155 65.2
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 8.9e-50 200.7 155 64.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.5e-49 199.9 154 66.2
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 3.4e-49 198.7 174 60.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 4.4e-49 198.4 153 64.1
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.8e-49 198.0 191 57.1
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 7.5e-49 197.6 181 56.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 9.8e-49 197.2 156 60.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.9e-48 194.9 197 51.8
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 6.4e-48 194.5 151 58.9
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 8.3e-48 194.1 150 60.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.4e-47 193.4 155 63.9
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.9e-47 193.0 170 57.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.4e-47 192.6 150 64.7
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.1e-47 191.8 172 55.8
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.2e-46 190.3 157 60.5
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.5e-46 188.7 152 60.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 4.6e-46 188.3 148 63.5
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 7.8e-46 187.6 151 60.3
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.9e-45 185.3 162 61.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.6e-45 184.5 154 63.6
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.9e-44 183.0 154 59.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.5e-44 182.6 151 58.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.3e-44 182.2 153 62.1
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 9.5e-44 180.6 155 58.7
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.5e-44 180.6 151 58.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.2e-43 180.3 159 57.9
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.6e-43 179.9 148 61.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.1e-43 179.5 157 57.3
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.1e-43 179.5 158 57.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.7e-43 178.3 165 54.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 8.1e-43 177.6 202 48.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.1e-42 177.2 211 46.0
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 5.2e-42 174.9 152 57.9
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.2e-41 173.7 119 66.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.5e-41 173.3 119 68.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.5e-41 173.3 120 70.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 3.4e-41 172.2 153 61.4
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.8e-41 171.4 153 58.2
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 7.6e-41 171.0 148 58.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 7.6e-41 171.0 119 67.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 9.9e-41 170.6 119 68.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.7e-40 169.9 113 69.9
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.9e-40 169.1 165 53.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 4.9e-40 168.3 145 57.2
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.9e-40 168.3 116 70.7
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.9e-39 166.4 119 68.1
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-39 165.6 112 70.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.2e-39 165.6 155 57.4
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 4.1e-39 165.2 112 70.5
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 9.2e-39 164.1 112 69.6
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.1e-38 162.9 112 73.2
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 2.1e-38 162.9 160 55.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.1e-38 162.9 113 68.1
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 3.5e-38 162.2 131 59.5
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 1.7e-37 159.8 112 67.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 2.3e-37 159.5 150 55.3
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.3e-37 159.5 109 69.7
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 3.0e-37 159.1 148 56.1
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.6e-37 157.5 110 67.3
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.9e-36 156.4 150 54.7
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.5e-36 156.0 112 67.0
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 5.6e-36 154.8 153 54.9
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.2e-35 153.7 112 67.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-35 153.7 127 58.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.6e-35 152.1 129 59.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 6.2e-35 151.4 112 65.2
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.2e-33 147.1 116 57.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-32 143.7 153 53.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.9e-32 141.7 148 48.6
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 3.5e-30 135.6 133 51.9
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 6.0e-30 134.8 96 66.7
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.6e-29 131.3 159 48.4
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.5e-28 130.2 130 56.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.1e-26 124.0 115 54.8
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.1e-26 122.5 77 70.1
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.6e-25 119.4 152 44.7
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 4.2e-23 112.1 148 47.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 9.3e-23 110.9 70 74.3
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.6e-22 110.2 100 57.0
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.1e-22 109.8 77 61.0
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 7.9e-22 107.8 122 50.8
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.3e-21 106.3 69 73.9
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.1e-21 105.1 157 42.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.3e-20 102.4 70 70.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.8e-19 98.6 150 38.0
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.1e-18 97.4 69 69.6
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.4e-18 97.1 71 64.8
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.0e-18 94.4 87 57.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.5e-17 92.0 141 42.6
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.9e-16 88.6 123 45.5
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 4.2e-15 85.5 120 45.0
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 7.1e-15 84.7 75 56.0
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.2e-11 71.6 55 61.8
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.5e-09 65.5 37 73.0
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 7.6e-09 64.7 70 47.1
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.0e-08 64.3 38 73.7
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 2.2e-08 63.2 44 61.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 2.9e-08 62.8 44 63.6
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.9e-08 62.0 37 70.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.9e-07 60.1 36 72.2
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.5e-07 59.7 54 44.4
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.5e-07 59.7 35 71.4
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-07 59.3 36 75.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.5e-07 58.5 39 66.7
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 5.5e-07 58.5 44 59.1
ATR0620G116 Amborella trichopoda HOM05D004274 ORTHO05D004980 7.1e-07 58.2 38 65.8
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.6e-06 57.0 34 73.5
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 1.6e-06 57.0 45 51.1
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 2.1e-06 56.6 35 68.6
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 2.7e-06 56.2 38 65.8
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 2.7e-06 56.2 37 70.3
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 4.6e-06 55.5 37 64.9


User provided reference genes

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