Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0153500 Rhododendron simsii HOM05D000519 ORTHO05D001210 1.9e-110 402.5 202 100.0
Rhsim12G0072700 Rhododendron simsii HOM05D000519 ORTHO05D001210 1.7e-66 256.5 141 94.3
RhsimUnG0099500 Rhododendron simsii HOM05D000519 ORTHO05D001210 4.7e-45 185.3 115 80.9
Dinv02125 Davidia involucrata HOM05D000519 ORTHO05D001210 7.4e-14 81.6 58 72.4
CSS0008725 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 1.3e-13 80.9 58 74.1
Oeu028986.1 Olea europaea HOM05D000519 ORTHO05D001210 6.2e-13 78.6 58 70.7
Actinidia18375 Actinidia chinensis HOM05D000519 ORTHO05D001210 8.2e-13 78.2 58 74.1
Rhsim07G0073300 Rhododendron simsii HOM05D000519 ORTHO05D001210 8.2e-13 78.2 58 72.4
Dinv31994 Davidia involucrata HOM05D000519 ORTHO05D001210 1.4e-12 77.4 77 58.4
CSS0039548 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 1.8e-12 77.0 58 70.7
TWI38G1437 Tripterygium wilfordii HOM05D000519 ORTHO05D001210 2.4e-12 76.6 57 68.4
PGR044G0162 Punica granatum HOM05D000519 ORTHO05D001210 4.1e-12 75.9 57 68.4
Eucgr.J00085 Eucalyptus grandis HOM05D000519 ORTHO05D001210 6.9e-12 75.1 57 70.2
Prupe.2G047100 Prunus persica HOM05D000519 ORTHO05D001210 9.0e-12 74.7 57 68.4
QL04p021809 Quercus lobata HOM05D000519 ORTHO05D001210 9.0e-12 74.7 57 66.7
FvH4_7g04140 Fragaria vesca HOM05D000519 ORTHO05D001210 1.5e-11 73.9 57 66.7
FAN01G0617 Fragaria x ananassa HOM05D000519 ORTHO05D001210 1.5e-11 73.9 57 66.7
FAN10G1451 Fragaria x ananassa HOM05D000519 ORTHO05D001210 1.5e-11 73.9 57 66.7
Thecc.10G138800 Theobroma cacao HOM05D000519 ORTHO05D001210 1.5e-11 73.9 58 67.2
FAN06G2804 Fragaria x ananassa HOM05D000519 ORTHO05D001210 2.0e-11 73.6 57 64.9
Hma1.2p1_0233F.1_g098160 Hydrangea macrophylla HOM05D000519 ORTHO05D001210 2.0e-11 73.6 58 65.5
TWI63G1775 Tripterygium wilfordii HOM05D000519 ORTHO05D001210 2.6e-11 73.2 55 65.5
vmacro13804 Vaccinium macrocarpon HOM05D000519 ORTHO05D001210 2.6e-11 73.2 56 71.4
Haze_02970 Corylus avellana HOM05D000519 ORTHO05D001210 3.4e-11 72.8 58 60.3
Duzib106G2054 Durio zibethinus HOM05D000519 ORTHO05D001210 4.5e-11 72.4 58 63.8
FAN03G2892 Fragaria x ananassa HOM05D000519 ORTHO05D001210 4.5e-11 72.4 57 64.9
RcHm_v2.0_Chr1g0328231 Rosa chinensis HOM05D000519 ORTHO05D001210 4.5e-11 72.4 55 65.5
SGA_v2.0_scaffold18G08212 Striga asiatica HOM05D000519 ORTHO05D001210 5.8e-11 72.0 58 63.8
DCAR_031842 Daucus carota HOM05D000519 ORTHO05D001210 1.0e-10 71.2 82 51.2
DCAR_031840 Daucus carota HOM05D000519 ORTHO05D001210 1.7e-10 70.5 58 63.8
Duzib114G0410 Durio zibethinus HOM05D000519 ORTHO05D001210 1.7e-10 70.5 58 62.1
Lj7A492G19 Lonicera japonica HOM05D000519 ORTHO05D001210 1.7e-10 70.5 60 66.7
CiPaw.14G010700 Carya illinoinensis HOM05D000519 ORTHO05D001210 2.2e-10 70.1 57 61.4
Os01g0270100 Oryza sativa ssp. japonica HOM05D000519 ORTHO05D001210 2.2e-10 70.1 59 64.4
MD07G1043000 Malus domestica HOM05D000519 ORTHO05D001210 2.9e-10 69.7 58 63.8
SalBow1G7707 Salvia bowleyana HOM05D000519 ORTHO05D001210 3.8e-10 69.3 58 62.1
COL.COLO4_21327 Corchorus olitorius HOM05D000519 ORTHO05D001210 5.0e-10 68.9 58 62.1
Nn7g36993 Nelumbo nucifera HOM05D000519 ORTHO05D001210 5.0e-10 68.9 58 62.1
Potri.003G192200 Populus trichocarpa HOM05D000519 ORTHO05D001210 5.0e-10 68.9 68 54.4
Gohir.D10G198100 Gossypium hirsutum HOM05D000519 ORTHO05D001210 6.5e-10 68.6 58 62.1
Gorai.011G221800 Gossypium raimondii HOM05D000519 ORTHO05D001210 6.5e-10 68.6 58 62.1
CSS0026186 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 8.4e-10 68.2 47 72.3
ClCG11G013050 Citrullus lanatus HOM05D000519 ORTHO05D001210 8.4e-10 68.2 57 61.4
Ciclev10002346m.g Citrus clementina HOM05D000519 ORTHO05D001210 8.4e-10 68.2 55 63.6
Sed0025076 Sechium edule HOM05D000519 ORTHO05D001210 8.4e-10 68.2 57 61.4
CsaV3_5G029540 Cucumis sativus L. HOM05D000519 ORTHO05D001210 1.1e-09 67.8 57 61.4
MBI19_g39142_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D001210 1.4e-09 67.4 58 63.8
MD02G1275000 Malus domestica HOM05D000519 ORTHO05D001210 1.4e-09 67.4 58 60.3
Cfa010968 Carpinus fangiana HOM05D000519 ORTHO05D001210 1.9e-09 67.0 57 56.1
CiPaw.13G017000 Carya illinoinensis HOM05D000519 ORTHO05D001210 1.9e-09 67.0 57 59.6
CANSAT56G1130 Cannabis sativa HOM05D000519 ORTHO05D001210 2.5e-09 66.6 58 55.2
CANSAT56G1974 Cannabis sativa HOM05D000519 ORTHO05D001210 2.5e-09 66.6 58 55.2
Aqoxy1G00058 Aquilegia oxysepala HOM05D000519 ORTHO05D001210 3.2e-09 66.2 57 61.4
Lalb_Chr19g0132871 Lupinus albus HOM05D000519 ORTHO05D001210 3.2e-09 66.2 57 59.6
ATR0307G050 Amborella trichopoda HOM05D000519 ORTHO05D001210 4.2e-09 65.9 58 63.8
MSTRG.26921 Avicennia marina HOM05D000519 ORTHO05D001210 4.2e-09 65.9 58 58.6
ECA236G4990 Erigeron canadensis HOM05D000519 ORTHO05D001210 4.2e-09 65.9 59 55.9
Gohir.A10G190300 Gossypium hirsutum HOM05D000519 ORTHO05D001210 4.2e-09 65.9 58 60.3
PSO339G0227 Papaver somniferum HOM05D000519 ORTHO05D001210 4.2e-09 65.9 57 66.7
PSO384G4053 Papaver somniferum HOM05D000519 ORTHO05D001210 4.2e-09 65.9 57 66.7
Gohir.A06G173900 Gossypium hirsutum HOM05D000519 ORTHO05D001210 5.5e-09 65.5 56 57.1
Peaxi162Scf00516g00518 Petunia axillaris HOM05D000519 ORTHO05D001210 5.5e-09 65.5 58 56.9
Atru.chr12.1206 Acer truncatum HOM05D000519 ORTHO05D001210 7.1e-09 65.1 55 61.8
arahy.Tifrunner.gnm1.ann1.MLA72C Arachis hypogaea HOM05D000519 ORTHO05D001210 7.1e-09 65.1 102 39.2
arahy.Tifrunner.gnm1.ann1.ZL1DA1 Arachis hypogaea HOM05D000519 ORTHO05D001210 7.1e-09 65.1 102 39.2
THA.LOC104799337 Tarenaya hassleriana HOM05D000519 ORTHO05D001210 7.1e-09 65.1 51 64.7
Lsat_1_v5_gn_7_31141 Lactuca sativa HOM05D000519 ORTHO05D001210 9.3e-09 64.7 57 52.6
Medtr8g041410 Medicago truncatula HOM05D000519 ORTHO05D001210 9.3e-09 64.7 57 56.1
Nn2g14598 Nelumbo nucifera HOM05D000519 ORTHO05D001210 9.3e-09 64.7 58 58.6
Psat4g143880 Pisum sativum HOM05D000519 ORTHO05D001210 9.3e-09 64.7 57 56.1
Sabra01G0023500 Salix brachista HOM05D000519 ORTHO05D001210 9.3e-09 64.7 57 59.6
unitig_749.g14102 Utricularia gibba HOM05D000519 ORTHO05D001210 9.3e-09 64.7 58 53.4
BcaB06g25535 Brassica carinata HOM05D000519 ORTHO05D001210 1.2e-08 64.3 51 66.7
Migut.H00005 Erythranthe guttata HOM05D000519 ORTHO05D001210 1.2e-08 64.3 59 61.0
Lalb_Chr03g0032601 Lupinus albus HOM05D000519 ORTHO05D001210 1.2e-08 64.3 57 57.9
A05p36980 Brassica napus HOM05D000519 ORTHO05D001210 1.6e-08 63.9 51 66.7
Carub.0003s1182 Capsella rubella HOM05D000519 ORTHO05D001210 1.6e-08 63.9 51 66.7
Potri.001G032900 Populus trichocarpa HOM05D000519 ORTHO05D001210 1.6e-08 63.9 57 59.6
Glyma.13G189500 Glycine max HOM05D000519 ORTHO05D001210 2.1e-08 63.5 57 56.1
Glyma.15G227500 Glycine max HOM05D000519 ORTHO05D001210 2.1e-08 63.5 57 56.1
LjContig00430g0007944 Lotus japonicus HOM05D000519 ORTHO05D001210 2.1e-08 63.5 57 56.1
Manes.04G155400 Manihot esculenta HOM05D000519 ORTHO05D001210 2.1e-08 63.5 57 61.4
TAR633G0145 Trochodendron aralioides HOM05D000519 ORTHO05D001210 2.1e-08 63.5 58 60.3
BcaB04g21075 Brassica carinata HOM05D000519 ORTHO05D001210 2.7e-08 63.2 51 64.7
BcaC05g29262 Brassica carinata HOM05D000519 ORTHO05D001210 2.7e-08 63.2 51 64.7
BolC5t34208H Brassica oleracea HOM05D000519 ORTHO05D001210 2.7e-08 63.2 51 64.7
Gorai.010G215400 Gossypium raimondii HOM05D000519 ORTHO05D001210 2.7e-08 63.2 56 55.4
VMungo1127G0633 Vigna mungo HOM05D000519 ORTHO05D001210 2.7e-08 63.2 57 56.1
Ah.10g029850 Amaranthus hybridus HOM05D000519 ORTHO05D001210 3.5e-08 62.8 54 55.6
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 3.5e-08 62.8 58 55.2
Thhalv10021442m.g Eutrema salsugineum HOM05D000519 ORTHO05D001210 3.5e-08 62.8 51 64.7
Sabra03G0143100 Salix brachista HOM05D000519 ORTHO05D001210 3.5e-08 62.8 57 57.9
EL10Ac2g02716 Beta vulgaris HOM05D000519 ORTHO05D001210 4.6e-08 62.4 54 53.7
BNapus_Darmor_BZH_scaffold_149p00020 Brassica napus HOM05D000519 ORTHO05D001210 4.6e-08 62.4 51 64.7
HanXRQChr04g0119231 Helianthus annuus HOM05D000519 ORTHO05D001210 4.6e-08 62.4 59 54.2
Sp3g10620 Schrenkiella parvula HOM05D000519 ORTHO05D001210 4.6e-08 62.4 57 57.9
AT3G12490 Arabidopsis thaliana HOM05D000519 ORTHO05D001210 6.1e-08 62.0 57 61.4
Ca_24028_v3 Cicer arietinum L. HOM05D000519 ORTHO05D001210 6.1e-08 62.0 57 56.1
C05p55420 Brassica napus HOM05D000519 ORTHO05D001210 7.9e-08 61.6 51 64.7
Haze_20276 Corylus avellana HOM05D000519 ORTHO05D001210 7.9e-08 61.6 55 60.0
Haze_20281 Corylus avellana HOM05D000519 ORTHO05D001210 7.9e-08 61.6 55 60.0
Aa31sc1276G20 Aethionema arabicum HOM05D000519 ORTHO05D001210 1.0e-07 61.2 51 60.8
BcaC09g48245 Brassica carinata HOM05D000519 ORTHO05D001210 1.0e-07 61.2 51 62.7
C01p52750 Brassica napus HOM05D000519 ORTHO05D001210 1.0e-07 61.2 51 62.7
BolC1t05212H Brassica oleracea HOM05D000519 ORTHO05D001210 1.0e-07 61.2 51 62.7
BraA01t04133Z Brassica rapa HOM05D000519 ORTHO05D001210 1.0e-07 61.2 51 62.7
CDE08G1526 Ceratophyllum demersum HOM05D000519 ORTHO05D001210 1.0e-07 61.2 58 56.9
Gohir.D06G184000 Gossypium hirsutum HOM05D000519 ORTHO05D001210 1.0e-07 61.2 54 55.6
Phvul.011G196600 Phaseolus vulgaris HOM05D000519 ORTHO05D001210 1.0e-07 61.2 57 52.6
Cfa019958 Carpinus fangiana HOM05D000519 ORTHO05D001210 1.3e-07 60.8 55 60.0
Sabra16G0034200 Salix brachista HOM05D000519 ORTHO05D001210 1.3e-07 60.8 57 57.9
AL3G24120 Arabidopsis lyrata HOM05D000519 ORTHO05D001210 1.8e-07 60.5 51 62.7
Nitab4.5_0000021g0820 Nicotiana tabacum HOM05D000519 ORTHO05D001210 1.8e-07 60.5 59 55.9
Hund13411 Selenicereus undatus HOM05D000519 ORTHO05D001210 1.8e-07 60.5 54 50.0
GSVIVG01036582001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.8e-07 60.5 57 54.4
CDE02G2182 Ceratophyllum demersum HOM05D000519 ORTHO05D001210 2.3e-07 60.1 58 56.9
HanXRQChr13g0424331 Helianthus annuus HOM05D000519 ORTHO05D001210 2.3e-07 60.1 58 51.7
THA.LOC104826741 Tarenaya hassleriana HOM05D000519 ORTHO05D001210 2.3e-07 60.1 49 59.2
TAR636G0712 Trochodendron aralioides HOM05D000519 ORTHO05D001210 2.3e-07 60.1 58 58.6
AUR62031684 Chenopodium quinoa HOM05D000519 ORTHO05D001210 3.0e-07 59.7 54 51.9
CARHR086990 Cardamine hirsuta HOM05D000519 ORTHO05D001210 3.9e-07 59.3 51 60.8
Sopen03g028040 Solanum pennellii HOM05D000519 ORTHO05D001210 3.9e-07 59.3 58 48.3
Nitab4.5_0009278g0010 Nicotiana tabacum HOM05D000519 ORTHO05D001210 5.1e-07 58.9 59 52.5
Sc11g0006180 Simmondsia chinensis HOM05D000519 ORTHO05D001210 5.1e-07 58.9 55 52.7
CiPaw.09G051400 Carya illinoinensis HOM05D000519 ORTHO05D001210 6.7e-07 58.5 55 61.8
TWI53G0432 Tripterygium wilfordii HOM05D000519 ORTHO05D001210 6.7e-07 58.5 57 57.9
PGSC0003DMG400026473 Solanum tuberosum HOM05D000519 ORTHO05D001210 8.7e-07 58.2 58 48.3
Solyc03g097270.3 Solanum lycopersicum HOM05D000519 ORTHO05D001210 1.5e-06 57.4 58 46.6
AUR62032567 Chenopodium quinoa HOM05D000519 ORTHO05D001210 2.5e-06 56.6 54 48.1
HPP92_012548 Vanilla planifolia HOM05D000519 ORTHO05D001210 2.5e-06 56.6 55 56.4
CARHR208160 Cardamine hirsuta HOM05D000519 ORTHO05D001210 3.3e-06 56.2 55 50.9
Atru.chr1.1350 Acer truncatum HOM05D000519 ORTHO05D001210 4.3e-06 55.8 49 61.2
Ciclev10012693m.g Citrus clementina HOM05D000519 ORTHO05D001210 5.7e-06 55.5 73 46.6
Thecc.05G122600 Theobroma cacao HOM05D000519 ORTHO05D001210 5.7e-06 55.5 57 50.9
A03p02150 Brassica napus HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 47.3
C03p02460 Brassica napus HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 47.3
BolC3t12797H Brassica oleracea HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 47.3
BraA03t09579Z Brassica rapa HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 47.3
CSS0046647 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 7.4e-06 55.1 56 57.1
Duzib128G1701 Durio zibethinus HOM05D000519 ORTHO05D001210 7.4e-06 55.1 57 52.6
PGR042G2892 Punica granatum HOM05D000519 ORTHO05D001210 7.4e-06 55.1 57 54.4
QL07p013345 Quercus lobata HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 52.7
QL07p013373 Quercus lobata HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 52.7
RcHm_v2.0_Chr3g0494971 Rosa chinensis HOM05D000519 ORTHO05D001210 7.4e-06 55.1 55 54.5
AT5G05110 Arabidopsis thaliana HOM05D000519 ORTHO05D001210 9.7e-06 54.7 55 47.3


User provided reference genes

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