Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 0.0e+00 1725.7 869 100.0
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 0.0e+00 1375.9 917 78.6
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.0e-298 1030.0 943 62.7
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 4.2e-276 954.9 941 60.3
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.5e-241 840.1 930 54.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.5e-212 743.8 932 50.5
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 4.5e-209 732.3 978 50.6
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 4.8e-203 712.2 894 50.7
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 7.2e-199 698.4 1019 46.3
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 3.9e-197 692.6 881 48.9
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.5e-193 680.6 915 49.5
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 7.7e-193 678.3 1063 44.8
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 4.2e-191 672.5 927 47.8
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.1e-190 670.2 897 47.9
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 9.7e-188 661.4 894 47.8
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 5.0e-184 649.0 1086 42.5
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 5.5e-183 645.6 906 46.8
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.7e-182 642.5 908 46.9
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 6.1e-182 642.1 904 46.2
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 4.0e-181 639.4 888 48.5
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.5e-180 637.5 909 47.2
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.5e-180 637.5 898 46.9
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 4.4e-180 636.0 950 45.4
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.8e-179 633.3 796 49.7
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 8.2e-179 631.7 911 47.4
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 4.1e-178 629.4 948 45.4
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 2.0e-177 627.1 903 46.5
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.8e-173 614.0 943 45.2
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 3.0e-173 613.2 883 46.3
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 2.0e-172 610.5 540 64.3
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 2.0e-172 610.5 962 44.8
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 3.4e-172 609.8 920 45.3
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 7.5e-172 608.6 903 46.0
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 2.8e-171 606.7 909 46.3
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 5.4e-170 602.4 914 45.7
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 1.7e-168 597.4 1002 41.8
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 5.0e-168 595.9 578 58.7
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.5e-167 594.3 971 43.2
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 2.1e-166 590.5 879 46.3
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 6.1e-166 589.0 612 57.4
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.7e-164 582.4 884 44.5
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.1e-162 578.2 897 44.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 7.0e-162 575.5 943 43.3
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 7.7e-161 572.0 875 45.3
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.3e-160 571.2 881 44.0
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 5.6e-159 565.8 519 61.3
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 9.5e-159 565.1 868 45.4
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 4.7e-158 562.8 1080 39.8
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 1.4e-157 561.2 507 61.9
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 3.0e-157 560.1 570 56.7
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 4.0e-157 559.7 887 43.1
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.0e-157 559.7 810 46.9
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 3.4e-156 556.6 874 44.7
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 9.8e-156 555.1 876 43.6
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.9e-155 553.5 680 51.9
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.4e-154 551.2 946 42.4
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 5.4e-154 549.3 521 60.5
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.6e-153 547.7 507 60.7
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 7.8e-153 545.4 874 42.8
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.2e-150 538.1 684 50.1
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.2e-150 538.1 523 59.1
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 6.2e-150 535.8 898 43.8
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 8.0e-150 535.4 691 51.8
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.4e-149 534.6 897 41.4
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 4.0e-149 533.1 564 55.5
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 5.2e-149 532.7 472 61.4
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.2e-148 531.6 943 42.1
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 1.5e-148 531.2 884 41.7
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 4.1e-146 523.1 894 42.8
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 3.9e-144 516.5 917 42.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.0e-144 516.2 898 42.1
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 8.6e-144 515.4 448 61.6
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 2.5e-143 513.8 414 64.7
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.2e-142 511.5 896 42.0
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 8.9e-141 505.4 833 43.0
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 9.2e-138 495.4 453 62.3
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 1.6e-137 494.6 879 41.8
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 7.8e-137 492.3 873 40.8
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 6.8e-133 479.2 445 60.9
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 7.6e-132 475.7 481 55.3
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 9.9e-132 475.3 871 40.0
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 5.1e-128 463.0 865 39.4
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 8.6e-128 462.2 855 39.3
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.3e-127 460.3 495 53.9
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 3.6e-126 456.8 954 37.8
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 1.1e-125 455.3 864 40.0
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 4.0e-125 453.4 421 58.4
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 6.8e-125 452.6 660 45.5
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 8.9e-125 452.2 422 58.5
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.2e-124 451.8 386 62.2
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 1.9e-122 444.5 462 55.0
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 7.1e-122 442.6 861 38.9
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.0e-120 438.7 410 58.5
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.3e-120 437.6 505 50.1
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 3.9e-120 436.8 501 50.9
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 1.9e-119 434.5 487 51.5
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 2.5e-119 434.1 449 54.8
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 6.0e-113 412.9 803 41.8
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 2.3e-112 411.0 903 37.1
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.6e-110 404.8 675 44.3
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 1.4e-106 391.7 467 49.3
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 7.9e-105 386.0 910 36.6
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 1.9e-103 381.3 313 63.3
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.6e-81 308.5 600 41.0
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 6.7e-80 303.1 559 37.4
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 8.5e-75 286.2 295 53.9
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 5.2e-40 170.6 170 53.5
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.3e-35 156.0 212 40.1
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.5e-31 142.5 113 65.5
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 4.9e-30 137.5 110 65.5
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.3e-24 118.6 81 74.1
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 1.4e-21 109.4 141 45.4
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 3.9e-19 101.3 127 54.3
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.6e-17 95.9 84 64.3
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 3.4e-15 88.2 132 46.2
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 2.4e-13 82.0 77 57.1


User provided reference genes

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