Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0015400 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.7e-68 261.9 135 100.0
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.6e-33 145.2 101 62.4
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.2e-29 132.1 107 56.1
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.2e-29 131.7 101 58.4
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.1e-29 131.0 101 57.4
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.1e-29 131.0 109 59.6
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.2e-28 130.2 101 57.4
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.5e-28 128.6 101 58.4
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 3.0e-27 125.6 98 61.2
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 3.0e-27 125.6 99 58.6
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 3.3e-26 122.1 101 55.4
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 2.1e-25 119.4 101 54.5
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 3.1e-24 115.5 101 55.4
Oeu061866.1 Olea europaea HOM05D002652 ORTHO05D002739 4.0e-24 115.2 98 54.1
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.0e-24 115.2 101 51.5
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 5.8e-23 111.3 107 48.6
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 5.8e-23 111.3 98 50.0
Rhsim02G0047200 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.3e-22 110.2 101 51.5
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 2.4e-21 105.9 98 54.1
CSS0002481 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 4.2e-21 105.1 100 49.0
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 7.1e-21 104.4 98 52.0
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 1.2e-20 103.6 99 53.5
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 1.2e-20 103.6 98 50.0
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 2.1e-20 102.8 100 49.0
Potri.010G191400 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.7e-20 102.4 101 45.5
Hma1.2p1_0565F.1_g179480 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 8.7e-19 97.4 107 44.9
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 8.7e-19 97.4 100 44.0
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.1e-18 97.1 100 45.0
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.1e-18 97.1 100 45.0
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.5e-18 96.7 101 44.6
Duzib151G0998 Durio zibethinus HOM05D002652 ORTHO05D002739 2.5e-18 95.9 98 52.0
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 2.5e-18 95.9 108 39.8
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 3.6e-17 92.0 101 40.6
COL.COLO4_15987 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.1e-16 90.5 109 45.9
Oeu011205.1 Olea europaea HOM05D002652 ORTHO05D002739 1.1e-16 90.5 101 41.6
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.4e-16 89.4 100 41.0
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 6.9e-16 87.8 101 42.6
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.0e-15 86.3 104 43.3
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.0e-15 86.3 99 45.5
Oeu011207.1 Olea europaea HOM05D002652 ORTHO05D002739 2.6e-15 85.9 101 40.6
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 3.4e-15 85.5 102 41.2
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 3.4e-15 85.5 101 38.6
Migut.N00313 Erythranthe guttata HOM05D002652 ORTHO05D002739 5.8e-15 84.7 100 39.0
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 7.6e-15 84.3 99 43.4
Lsat_1_v5_gn_2_105441 Lactuca sativa HOM05D002652 ORTHO05D002739 1.7e-14 83.2 98 40.8
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 2.9e-14 82.4 98 43.9
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 2.9e-14 82.4 99 45.5
RhsimUnG0195100 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.9e-14 81.6 63 61.9
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 8.4e-14 80.9 99 44.4
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 8.4e-14 80.9 103 42.7
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 1.4e-13 80.1 101 37.6
DCAR_002581 Daucus carota HOM05D002652 ORTHO05D002739 1.9e-13 79.7 98 41.8
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.9e-13 79.7 103 41.7
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 4.2e-13 78.6 103 40.8
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 7.1e-13 77.8 91 40.7
Oeu011211.1 Olea europaea HOM05D002652 ORTHO05D002739 7.1e-13 77.8 101 39.6
DCAR_030374 Daucus carota HOM05D002652 ORTHO05D002739 9.3e-13 77.4 101 38.6
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 2.7e-12 75.9 101 38.6
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 3.5e-12 75.5 101 38.6
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 4.6e-12 75.1 99 41.4
DCAR_030376 Daucus carota HOM05D002652 ORTHO05D002739 4.6e-12 75.1 76 43.4
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 1.0e-11 73.9 102 37.3
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.3e-11 73.6 102 37.3
RcHm_v2.0_Chr5g0024661 Rosa chinensis HOM05D002652 ORTHO05D002739 1.3e-11 73.6 94 40.4
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 2.3e-11 72.8 101 38.6
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.0e-11 72.4 103 35.9
DCAR_030377 Daucus carota HOM05D002652 ORTHO05D002739 3.0e-11 72.4 92 39.1
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.9e-11 72.0 102 36.3
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.9e-11 72.0 103 35.0
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 3.9e-11 72.0 101 33.7
DCAR_030375 Daucus carota HOM05D002652 ORTHO05D002739 3.9e-11 72.0 92 39.1
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 5.1e-11 71.6 101 33.7
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 5.1e-11 71.6 99 37.4
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 1.1e-10 70.5 101 35.6
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 1.1e-10 70.5 102 35.3
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.5e-10 70.1 103 37.9
Duzib147G0896 Durio zibethinus HOM05D002652 ORTHO05D002739 1.5e-10 70.1 101 34.7
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-10 70.1 99 36.4
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.9e-10 69.7 101 34.7
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.9e-10 69.7 110 33.6
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.5e-10 69.3 103 35.0
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 2.5e-10 69.3 99 36.4
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.3e-10 68.6 99 34.3
Eucgr.I00042 Eucalyptus grandis HOM05D002652 ORTHO05D002739 7.4e-10 67.8 94 34.0
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 7.4e-10 67.8 101 36.6
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 7.4e-10 67.8 101 34.7
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 9.6e-10 67.4 101 35.6
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 9.6e-10 67.4 91 33.0
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 9.6e-10 67.4 99 35.4
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 1.3e-09 67.0 104 37.5
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.3e-09 67.0 104 37.5
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-09 67.0 99 34.3
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 1.3e-09 67.0 115 35.7
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 1.6e-09 66.6 101 34.7
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 2.8e-09 65.9 102 32.4
Eucgr.J01776 Eucalyptus grandis HOM05D002652 ORTHO05D002739 2.8e-09 65.9 94 33.0
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.8e-09 65.9 103 34.0
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.7e-09 65.5 103 34.0
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 3.7e-09 65.5 99 33.3
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.1e-08 63.9 94 34.0
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.1e-08 63.9 100 32.0
DCAR_030381 Daucus carota HOM05D002652 ORTHO05D002739 1.4e-08 63.5 69 43.5
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 2.4e-08 62.8 103 35.9
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.4e-08 62.8 101 34.7
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.4e-08 62.8 101 34.7
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 2.4e-08 62.8 100 32.0
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.1e-08 62.4 103 35.0
CANSAT11G2136 Cannabis sativa HOM05D002652 ORTHO05D002739 4.0e-08 62.0 102 32.4
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 4.0e-08 62.0 103 34.0
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 9.0e-08 60.8 94 35.1
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 9.0e-08 60.8 94 35.1
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 9.0e-08 60.8 94 35.1
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 9.0e-08 60.8 102 36.3
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 9.0e-08 60.8 101 33.7
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 1.2e-07 60.5 94 35.1
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.2e-07 60.5 99 30.3
QL06p021274 Quercus lobata HOM05D002652 ORTHO05D002739 1.2e-07 60.5 94 35.1
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 1.5e-07 60.1 95 37.9
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 1.5e-07 60.1 95 37.9
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.5e-07 60.1 98 33.7
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.5e-07 60.1 100 34.0
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.5e-07 60.1 99 31.3
PGR044G0093 Punica granatum HOM05D002652 ORTHO05D002739 1.5e-07 60.1 85 41.2
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 2.0e-07 59.7 101 33.7
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.0e-07 59.7 101 30.7
PGR044G1935 Punica granatum HOM05D002652 ORTHO05D002739 2.0e-07 59.7 85 41.2
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 2.6e-07 59.3 101 30.7
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 5.8e-07 58.2 102 29.4
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.6e-07 57.8 94 33.0
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.6e-07 57.8 94 33.0
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.6e-07 57.8 96 36.5
CiPaw.08G106800 Carya illinoinensis HOM05D002652 ORTHO05D002739 7.6e-07 57.8 103 31.1
Ciclev10007030m.g Citrus clementina HOM05D002652 ORTHO05D002739 7.6e-07 57.8 98 33.7
Rhsim02G0044400 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.6e-07 57.8 92 32.6
Rhsim02G0046500 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.6e-07 57.8 92 32.6
Prupe.1G049800 Prunus persica HOM05D002652 ORTHO05D002739 1.0e-06 57.4 92 37.0
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 1.0e-06 57.4 101 32.7
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 1.0e-06 57.4 101 32.7
Aa31LG9G4330 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.3e-06 57.0 96 35.4
Prupe.6G152600 Prunus persica HOM05D002652 ORTHO05D002739 1.3e-06 57.0 85 38.8
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.7e-06 56.6 94 33.0
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 1.7e-06 56.6 92 33.7
FvH4_3g15020 Fragaria vesca HOM05D002652 ORTHO05D002739 1.7e-06 56.6 101 33.7
Nn1g06038 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.7e-06 56.6 87 36.8
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.2e-06 56.2 94 33.0
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 2.9e-06 55.8 101 30.7
Oeu011206.1 Olea europaea HOM05D002652 ORTHO05D002739 2.9e-06 55.8 97 33.0
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.8e-06 55.5 101 32.7
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 3.8e-06 55.5 102 29.4
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 4.9e-06 55.1 98 32.7
CANSAT78G1278 Cannabis sativa HOM05D002652 ORTHO05D002739 4.9e-06 55.1 105 31.4
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 4.9e-06 55.1 99 25.3


User provided reference genes

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