Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 0.0e+00 2306.6 1347 100.0
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.1e-237 827.0 749 69.6
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.1e-161 575.5 1269 36.4
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.7e-160 570.9 1292 36.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 9.4e-81 306.6 854 32.2
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.5e-67 261.2 1018 28.0
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.2e-51 209.9 614 32.1
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.7e-51 208.8 868 27.8
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.7e-51 208.8 740 29.5
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.9e-49 202.6 1285 24.1
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.7e-45 189.5 1075 25.2
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.4e-39 169.9 828 27.7
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 3.1e-31 142.1 1094 22.5
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.2e-31 141.4 542 27.1
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 8.9e-31 140.6 686 26.7
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.2e-28 132.1 500 27.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.5e-27 128.6 637 27.0
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 6.6e-26 124.4 726 24.0
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.4e-23 116.7 329 31.3
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.0e-22 112.8 620 26.6
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 1.7e-21 109.8 677 25.3
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-19 103.2 566 23.7
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.3e-18 99.4 863 24.1
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 5.1e-18 98.2 262 30.9
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.1e-17 97.1 792 23.4
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 7.3e-17 94.4 844 21.7
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-16 93.2 194 31.4
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 4.8e-16 91.7 872 22.5
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 4.8e-16 91.7 260 33.1
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 4.8e-16 91.7 260 33.1
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.2e-16 91.3 438 25.8
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 8.1e-16 90.9 700 23.1
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.8e-15 89.7 225 34.2
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 2.4e-15 89.4 539 23.7
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 3.1e-15 89.0 245 33.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.0e-15 88.6 491 27.5
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 1.2e-14 87.0 612 24.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.6e-14 85.9 246 31.7
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.8e-14 84.7 888 22.1
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 7.6e-14 84.3 407 26.8
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.7e-13 83.2 266 31.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.7e-13 83.2 861 23.0
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 2.2e-13 82.8 123 39.0
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.1e-12 80.5 225 27.6
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.1e-12 80.5 247 31.6
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 1.4e-12 80.1 113 44.2
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.4e-12 79.3 471 26.1
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 2.4e-12 79.3 93 44.1
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.2e-12 79.0 242 31.4
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 1.2e-11 77.0 666 22.7
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.6e-11 76.6 382 27.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.6e-11 76.6 243 28.4
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.6e-11 76.6 646 22.3
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 4.6e-11 75.1 637 21.2
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 4.6e-11 75.1 209 32.5
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.9e-11 74.3 233 30.0
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.3e-10 73.6 622 24.0
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 1.3e-10 73.6 128 36.7
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.3e-10 72.8 332 26.8
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.3e-10 72.8 109 40.4
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 2.3e-10 72.8 373 24.1
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.3e-10 72.8 401 25.4
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 2.3e-10 72.8 202 30.2
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 3.0e-10 72.4 367 25.9
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 5.1e-10 71.6 694 21.3
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 5.1e-10 71.6 431 24.4
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 6.7e-10 71.2 120 36.7
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.9e-09 69.7 798 22.7
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.5e-09 69.3 94 40.4
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 2.5e-09 69.3 376 22.1
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 4.3e-09 68.6 668 22.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 7.4e-09 67.8 534 23.4
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 9.6e-09 67.4 285 25.6
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.6e-08 66.6 883 21.2
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.1e-08 66.2 565 21.6
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 2.8e-08 65.9 146 32.2
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 3.7e-08 65.5 875 22.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.7e-08 65.5 125 34.4
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 3.7e-08 65.5 532 23.1
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-07 63.9 577 23.1
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 1.1e-07 63.9 96 38.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.4e-07 63.5 540 22.8
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 1.4e-07 63.5 131 34.4
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.8e-07 63.2 542 21.4
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 1.8e-07 63.2 120 35.0
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.8e-07 63.2 103 35.9
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 2.4e-07 62.8 821 24.1
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.1e-07 62.4 591 23.2
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.1e-07 62.4 53 50.9
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 3.1e-07 62.4 87 41.4
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 5.3e-07 61.6 68 44.1
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 6.9e-07 61.2 173 27.2
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.9e-07 61.2 600 23.8
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 6.9e-07 61.2 74 40.5
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 6.9e-07 61.2 594 21.7
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 9.0e-07 60.8 172 28.5
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.5e-06 60.1 47 55.3
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.5e-06 60.1 106 33.0
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.5e-06 60.1 223 28.7
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.6e-06 59.3 96 34.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 2.6e-06 59.3 1047 20.2
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 3.4e-06 58.9 58 46.6
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 5.8e-06 58.2 170 27.1
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 5.8e-06 58.2 222 27.0
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 7.6e-06 57.8 96 40.6
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 7.6e-06 57.8 564 22.5
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 7.6e-06 57.8 59 42.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 9.9e-06 57.4 504 23.0


User provided reference genes

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