Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0169400 Rhododendron simsii HOM05D000372 ORTHO05D003436 1.3e-103 379.8 195 100.0
Rhsim07G0169300 Rhododendron simsii HOM05D000372 ORTHO05D003436 6.1e-66 254.6 208 69.7
vmacro05111 Vaccinium macrocarpon HOM05D000372 ORTHO05D003436 3.2e-54 215.7 164 71.3
Dinv06101 Davidia involucrata HOM05D000372 ORTHO05D003436 8.6e-52 207.6 159 70.4
Dinv19797 Davidia involucrata HOM05D000372 ORTHO05D003436 1.5e-51 206.8 158 70.3
CSS0035630 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 5.6e-51 204.9 155 70.3
CSS0035919 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 5.6e-51 204.9 155 70.3
Hma1.2p1_0102F.1_g049740 Hydrangea macrophylla HOM05D000372 ORTHO05D003436 9.5e-51 204.1 159 69.2
Lj7C743T9 Lonicera japonica HOM05D000372 ORTHO05D003436 1.2e-50 203.8 160 70.6
Thecc.09G009700 Theobroma cacao HOM05D000372 ORTHO05D003436 2.1e-50 203.0 159 67.3
MD08G1047400 Malus domestica HOM05D000372 ORTHO05D003436 4.0e-49 198.7 159 68.6
CSS0024843 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 6.8e-49 198.0 155 67.1
Lsat_1_v5_gn_5_62200 Lactuca sativa HOM05D000372 ORTHO05D003436 4.4e-48 195.3 153 66.0
Duzib187G1714 Durio zibethinus HOM05D000372 ORTHO05D003436 7.5e-48 194.5 159 64.8
Cpa.g.sc23.44 Carica papaya HOM05D000372 ORTHO05D003436 9.9e-48 194.1 159 62.9
QL02p017417 Quercus lobata HOM05D000372 ORTHO05D003436 9.9e-48 194.1 160 64.4
Lsat_1_v5_gn_3_25440 Lactuca sativa HOM05D000372 ORTHO05D003436 2.9e-47 192.6 158 63.9
Prupe.1G400900 Prunus persica HOM05D000372 ORTHO05D003436 3.7e-47 192.2 159 66.7
Duzib150G0268 Durio zibethinus HOM05D000372 ORTHO05D003436 4.9e-47 191.8 156 66.0
Duzib168G1416 Durio zibethinus HOM05D000372 ORTHO05D003436 4.9e-47 191.8 159 62.3
Gohir.D05G065200 Gossypium hirsutum HOM05D000372 ORTHO05D003436 1.1e-46 190.7 159 62.3
Gorai.009G066000 Gossypium raimondii HOM05D000372 ORTHO05D003436 1.1e-46 190.7 159 62.3
Lalb_Chr14g0375411 Lupinus albus HOM05D000372 ORTHO05D003436 1.4e-46 190.3 159 62.9
TAR383G1081 Trochodendron aralioides HOM05D000372 ORTHO05D003436 2.4e-46 189.5 159 64.2
CANSAT25G2139 Cannabis sativa HOM05D000372 ORTHO05D003436 4.1e-46 188.7 161 64.6
Gohir.A05G062700 Gossypium hirsutum HOM05D000372 ORTHO05D003436 4.1e-46 188.7 159 61.0
VMungo1309G2648 Vigna mungo HOM05D000372 ORTHO05D003436 4.1e-46 188.7 160 63.1
Gorai.009G066300 Gossypium raimondii HOM05D000372 ORTHO05D003436 5.4e-46 188.3 159 62.9
HanXRQChr06g0174111 Helianthus annuus HOM05D000372 ORTHO05D003436 5.4e-46 188.3 158 62.7
Sed0022125 Sechium edule HOM05D000372 ORTHO05D003436 5.4e-46 188.3 159 61.0
Gohir.A05G063000 Gossypium hirsutum HOM05D000372 ORTHO05D003436 7.1e-46 188.0 159 62.3
Gohir.D05G065500 Gossypium hirsutum HOM05D000372 ORTHO05D003436 7.1e-46 188.0 159 62.9
Phvul.009G084900 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 7.1e-46 188.0 157 63.7
COL.COLO4_19011 Corchorus olitorius HOM05D000372 ORTHO05D003436 1.2e-45 187.2 159 62.3
Glyma.04G058400 Glycine max HOM05D000372 ORTHO05D003436 1.2e-45 187.2 158 63.9
Eucgr.C04019 Eucalyptus grandis HOM05D000372 ORTHO05D003436 2.7e-45 186.0 159 61.6
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 3.5e-45 185.7 159 62.9
MD15G1046500 Malus domestica HOM05D000372 ORTHO05D003436 3.5e-45 185.7 159 62.3
Atru.chr7.2608 Acer truncatum HOM05D000372 ORTHO05D003436 6.0e-45 184.9 168 59.5
VMungo0647G1491 Vigna mungo HOM05D000372 ORTHO05D003436 6.0e-45 184.9 161 60.9
CiPaw.16G070900 Carya illinoinensis HOM05D000372 ORTHO05D003436 1.0e-44 184.1 159 62.9
Haze_18342 Corylus avellana HOM05D000372 ORTHO05D003436 1.0e-44 184.1 159 62.3
MELO3C016937.2 Cucumis melo HOM05D000372 ORTHO05D003436 1.0e-44 184.1 159 60.4
Glyma.17G220800 Glycine max HOM05D000372 ORTHO05D003436 1.0e-44 184.1 161 60.9
Lsat_1_v5_gn_3_116581 Lactuca sativa HOM05D000372 ORTHO05D003436 1.0e-44 184.1 155 62.6
Oeu008769.1 Olea europaea HOM05D000372 ORTHO05D003436 1.0e-44 184.1 159 63.5
CsaV3_4G036290 Cucumis sativus L. HOM05D000372 ORTHO05D003436 1.3e-44 183.7 159 60.4
Phvul.001G043600 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 1.3e-44 183.7 161 60.2
ClCG05G016010 Citrullus lanatus HOM05D000372 ORTHO05D003436 3.0e-44 182.6 159 59.7
arahy.Tifrunner.gnm1.ann1.IKLL4G Arachis hypogaea HOM05D000372 ORTHO05D003436 3.9e-44 182.2 159 59.7
Glyma.U003300 Glycine max HOM05D000372 ORTHO05D003436 5.1e-44 181.8 158 62.0
Sed0000787 Sechium edule HOM05D000372 ORTHO05D003436 5.1e-44 181.8 158 60.1
arahy.Tifrunner.gnm1.ann1.2363PW Arachis hypogaea HOM05D000372 ORTHO05D003436 8.6e-44 181.0 159 59.7
Lj5g0022261 Lotus japonicus HOM05D000372 ORTHO05D003436 8.6e-44 181.0 160 58.8
ECA240G4325 Erigeron canadensis HOM05D000372 ORTHO05D003436 1.1e-43 180.6 156 61.5
SalBow8G1746 Salvia bowleyana HOM05D000372 ORTHO05D003436 4.3e-43 178.7 154 64.9
SalBow8G4869 Salvia bowleyana HOM05D000372 ORTHO05D003436 4.3e-43 178.7 154 64.9
TWI63G0489 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 4.3e-43 178.7 158 58.2
RcHm_v2.0_Chr6g0304671 Rosa chinensis HOM05D000372 ORTHO05D003436 5.6e-43 178.3 159 62.3
Solyc08g068960.3 Solanum lycopersicum HOM05D000372 ORTHO05D003436 9.5e-43 177.6 162 63.0
Sopen08g022620 Solanum pennellii HOM05D000372 ORTHO05D003436 9.5e-43 177.6 162 63.0
Cc08_g06200 Coffea canephora HOM05D000372 ORTHO05D003436 1.6e-42 176.8 153 64.1
arahy.Tifrunner.gnm1.ann1.54Q5ZL Arachis hypogaea HOM05D000372 ORTHO05D003436 2.1e-42 176.4 157 59.2
Ciclev10010162m.g Citrus clementina HOM05D000372 ORTHO05D003436 2.1e-42 176.4 158 58.9
Sabra06G0210300 Salix brachista HOM05D000372 ORTHO05D003436 2.1e-42 176.4 158 59.5
TWI32G0796 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 2.1e-42 176.4 158 57.0
Nitab4.5_0006884g0010 Nicotiana tabacum HOM05D000372 ORTHO05D003436 2.8e-42 176.0 162 63.0
Potri.006G270500 Populus trichocarpa HOM05D000372 ORTHO05D003436 2.8e-42 176.0 158 58.9
Medtr1g013360 Medicago truncatula HOM05D000372 ORTHO05D003436 3.6e-42 175.6 163 58.9
arahy.Tifrunner.gnm1.ann1.672M4G Arachis hypogaea HOM05D000372 ORTHO05D003436 4.7e-42 175.3 157 58.6
Peaxi162Scf00288g01010 Petunia axillaris HOM05D000372 ORTHO05D003436 4.7e-42 175.3 162 60.5
Psat6g023640 Pisum sativum HOM05D000372 ORTHO05D003436 4.7e-42 175.3 162 58.6
Psat7g193560 Pisum sativum HOM05D000372 ORTHO05D003436 4.7e-42 175.3 162 58.6
Ca_15798_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 8.1e-42 174.5 158 60.8
ATR0580G441 Amborella trichopoda HOM05D000372 ORTHO05D003436 1.1e-41 174.1 160 58.8
Nn8g40299 Nelumbo nucifera HOM05D000372 ORTHO05D003436 1.8e-41 173.3 159 59.7
Potri.018G011400 Populus trichocarpa HOM05D000372 ORTHO05D003436 3.1e-41 172.6 158 57.0
Migut.E01430 Erythranthe guttata HOM05D000372 ORTHO05D003436 5.2e-41 171.8 160 61.2
Nitab4.5_0000502g0160 Nicotiana tabacum HOM05D000372 ORTHO05D003436 8.9e-41 171.0 162 61.1
PGSC0003DMG400029542 Solanum tuberosum HOM05D000372 ORTHO05D003436 8.9e-41 171.0 159 62.3
Aqoxy7G03181 Aquilegia oxysepala HOM05D000372 ORTHO05D003436 2.0e-40 169.9 159 59.1
CSS0002412 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.0e-40 169.9 135 68.1
CSS0018460 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.0e-40 169.9 123 69.9
Ca_13081_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 2.0e-40 169.9 159 57.9
ECA246G0477 Erigeron canadensis HOM05D000372 ORTHO05D003436 2.0e-40 169.9 158 58.2
Oeu023248.1 Olea europaea HOM05D000372 ORTHO05D003436 5.8e-40 168.3 137 65.7
CAN.G808.7 Capsicum annuum HOM05D000372 ORTHO05D003436 1.3e-39 167.2 163 60.1
FAN20G1896 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.3e-39 167.2 162 60.5
FAN27G2462 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.3e-39 167.2 162 60.5
HanXRQChr03g0082521 Helianthus annuus HOM05D000372 ORTHO05D003436 1.3e-39 167.2 135 63.7
Manes.03G005600 Manihot esculenta HOM05D000372 ORTHO05D003436 1.7e-39 166.8 159 56.6
Manes.16G133700 Manihot esculenta HOM05D000372 ORTHO05D003436 2.2e-39 166.4 152 58.6
Lj1g0015187 Lotus japonicus HOM05D000372 ORTHO05D003436 2.9e-39 166.0 157 57.3
Sc09g0010830 Simmondsia chinensis HOM05D000372 ORTHO05D003436 6.4e-39 164.9 155 56.8
MBI14_g24282_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D003436 8.4e-39 164.5 157 57.3
FvH4_2g37120 Fragaria vesca HOM05D000372 ORTHO05D003436 1.1e-38 164.1 162 60.5
TPR.G21426 Trifolium pratense HOM05D000372 ORTHO05D003436 1.1e-38 164.1 159 57.2
Sabra18G0012300 Salix brachista HOM05D000372 ORTHO05D003436 1.4e-38 163.7 158 54.4
PGR044G0422 Punica granatum HOM05D000372 ORTHO05D003436 3.2e-38 162.5 158 52.5
Psat5g033760 Pisum sativum HOM05D000372 ORTHO05D003436 5.4e-38 161.8 158 57.6
Migut.A00416 Erythranthe guttata HOM05D000372 ORTHO05D003436 7.1e-38 161.4 156 60.3
FAN15G3394 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.6e-37 160.2 161 57.8
Medtr3g105590 Medicago truncatula HOM05D000372 ORTHO05D003436 4.6e-37 158.7 159 56.6
SalBow4G3322 Salvia bowleyana HOM05D000372 ORTHO05D003436 4.6e-37 158.7 156 55.8
TPR.G38926 Trifolium pratense HOM05D000372 ORTHO05D003436 4.6e-37 158.7 138 59.4
THA.LOC104819942 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 6.0e-37 158.3 156 54.5
DCAR_003039 Daucus carota HOM05D000372 ORTHO05D003436 2.3e-36 156.4 154 56.5
SGA_v2.0_scaffold121G33025 Striga asiatica HOM05D000372 ORTHO05D003436 3.9e-36 155.6 139 64.0
CSS0030725 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 6.6e-36 154.8 157 54.8
EL10Ac2g02429 Beta vulgaris HOM05D000372 ORTHO05D003436 9.6e-35 151.0 158 53.2
SEGI_17810 Sequoiadendron giganteum HOM05D000372 ORTHO05D003436 8.1e-34 147.9 152 53.9
Sc23g0006190 Simmondsia chinensis HOM05D000372 ORTHO05D003436 1.4e-33 147.1 158 50.0
Ah.10g025030 Amaranthus hybridus HOM05D000372 ORTHO05D003436 6.9e-33 144.8 152 51.3
HPP92_011627 Vanilla planifolia HOM05D000372 ORTHO05D003436 3.4e-32 142.5 150 55.3
DCAR_003038 Daucus carota HOM05D000372 ORTHO05D003436 4.4e-32 142.1 151 51.7
PSO063G4267 Papaver somniferum HOM05D000372 ORTHO05D003436 5.8e-32 141.7 160 52.5
PSO782G1259 Papaver somniferum HOM05D000372 ORTHO05D003436 5.8e-32 141.7 160 52.5
TPR.G38882 Trifolium pratense HOM05D000372 ORTHO05D003436 1.3e-31 140.6 117 60.7
THA.LOC104803327 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 2.2e-31 139.8 161 49.1
AL6G21260 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 6.4e-31 138.3 159 48.4
Hund25587 Selenicereus undatus HOM05D000372 ORTHO05D003436 1.4e-30 137.1 156 48.7
HanXRQChr06g0174121 Helianthus annuus HOM05D000372 ORTHO05D003436 9.3e-30 134.4 129 58.1
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 2.1e-29 133.3 159 47.2
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.0e-28 131.0 159 46.5
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 1.3e-28 130.6 164 45.1
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 3.0e-28 129.4 159 45.3
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 3.9e-28 129.0 159 45.3
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 3.9e-28 129.0 159 45.3
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 3.9e-28 129.0 159 45.3
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 5.1e-28 128.6 159 45.9
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 5.1e-28 128.6 159 47.2
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 6.6e-28 128.3 159 45.3
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 8.7e-28 127.9 159 45.9
AT5G10680 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 1.5e-27 127.1 156 46.8
Migut.E00913 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.3e-26 124.0 120 55.0
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 3.6e-26 122.5 161 45.3
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 3.6e-26 122.5 161 45.3
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 4.8e-26 122.1 158 43.0
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 4.8e-26 122.1 158 43.0
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 4.8e-26 122.1 158 43.0
A03p04730 Brassica napus HOM05D000372 ORTHO05D003436 6.2e-26 121.7 159 42.1
BcaB05g21500 Brassica carinata HOM05D000372 ORTHO05D003436 8.1e-26 121.3 161 46.0
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 8.1e-26 121.3 161 45.3
AL6G21200 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 1.1e-25 120.9 138 49.3
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 1.4e-25 120.6 161 44.7
BraA03t09813Z Brassica rapa HOM05D000372 ORTHO05D003436 1.8e-25 120.2 160 41.9
Aa31LG3G16410 Aethionema arabicum HOM05D000372 ORTHO05D003436 2.4e-25 119.8 156 45.5
Sp2g22540 Schrenkiella parvula HOM05D000372 ORTHO05D003436 2.4e-25 119.8 145 47.6
BcaB01g06275 Brassica carinata HOM05D000372 ORTHO05D003436 3.1e-25 119.4 162 43.2
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 3.1e-25 119.4 161 44.7
AUR62037701 Chenopodium quinoa HOM05D000372 ORTHO05D003436 9.0e-25 117.9 150 48.0
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.2e-24 117.5 156 45.5
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 5.8e-24 115.2 157 43.3
BcaB01g06273 Brassica carinata HOM05D000372 ORTHO05D003436 2.2e-23 113.2 156 40.4
Medtr1g014670 Medicago truncatula HOM05D000372 ORTHO05D003436 2.2e-23 113.2 100 61.0
A03p04720 Brassica napus HOM05D000372 ORTHO05D003436 1.4e-22 110.5 144 44.4
BraA03t09812Z Brassica rapa HOM05D000372 ORTHO05D003436 1.4e-22 110.5 144 44.4
Psat6g023560 Pisum sativum HOM05D000372 ORTHO05D003436 6.0e-21 105.1 100 56.0
Actinidia23121 Actinidia chinensis HOM05D000372 ORTHO05D003436 1.0e-20 104.4 160 48.1
Aa31sc15G100 Aethionema arabicum HOM05D000372 ORTHO05D003436 5.6e-19 98.6 120 48.3
AUR62020299 Chenopodium quinoa HOM05D000372 ORTHO05D003436 1.4e-17 94.0 94 55.3
Zm00001eb274910 Zea mays HOM05D000372 ORTHO05D003436 9.0e-17 91.3 110 47.3
Zm00001eb389570 Zea mays HOM05D000372 ORTHO05D003436 2.0e-16 90.1 110 46.4
Os06g0654300 Oryza sativa ssp. japonica HOM05D000372 ORTHO05D003436 4.5e-16 89.0 110 45.5
Glyma.18G115250 Glycine max HOM05D000372 ORTHO05D003436 3.8e-15 85.9 78 55.1
CARHR155340 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.4e-14 83.2 110 45.5
PSO170G2710 Papaver somniferum HOM05D000372 ORTHO05D003436 3.0e-12 76.3 110 46.4
Sc23g0007090 Simmondsia chinensis HOM05D000372 ORTHO05D003436 2.8e-10 69.7 103 45.6
Mapoly0139s0010 Marchantia polymorpha HOM05D000372 ORTHO05D003436 8.2e-10 68.2 77 50.6
GSVIVG01033164001 Vitis vinifera HOM05D000372 ORTHO05D003436 3.4e-08 62.8 47 63.8


User provided reference genes

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